Pre_GI: BLASTP Hits

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Query: NC_004603:230000:255983 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 255983, End: 256597, Length: 615

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012779:3652737:366937236693723669992621Edwardsiella ictaluri 93-146, complete genomehypothetical protein8e-46183
NC_010170:4196197:422298242229824223614633Bordetella petrii, complete genomehypothetical protein5e-41167
NC_015224:4473230:448823944882394488883645Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein2e-38159
NC_011884:3393500:340270234027023403355654Cyanothece sp. PCC 7425, complete genomeputative transcriptional regulator5e-28124
NC_018704:645843:645843645843646487645Amphibacillus xylanus NBRC 15112, complete genomeputative regulatory protein1e-23109
NC_009925:1184442:120570112057011206348648Acaryochloris marina MBIC11017, complete genometranscriptional regulator, ArsR family1e-23109
NC_007516:2090901:209286120928612093505645Synechococcus sp. CC9605, complete genomeputative transcriptional regulator2e-1995.5
NC_008319:2172928:217501021750102175651642Synechococcus sp. CC9311, complete genomeiron-sulfur cluster biosynthesis transcriptional regulator SufR4e-1891.3
NC_014329:1169674:119051011905101191283774Corynebacterium pseudotuberculosis FRC41 chromosome, completeArsR family transcriptional regulator1e-1480.1
NC_017301:1172660:119033611903361191109774Corynebacterium pseudotuberculosis C231 chromosome, completeIron-sulfur cluster biosynthesis transcriptional regulator SufR1e-1480.1
NC_017303:1172656:119033911903391191187849Corynebacterium pseudotuberculosis I19 chromosome, complete genomeIron-sulfur cluster biosynthesis transcriptional regulator SufR1e-1479.7
NC_017031:1172644:119032511903251191173849Corynebacterium pseudotuberculosis P54B96 chromosome, completeIron-sulfur cluster biosynthesis transcriptional regulator SufR1e-1479.7
NC_016932:1157587:117526811752681176065798Corynebacterium pseudotuberculosis 316 chromosome, complete genomeIron-sulfur cluster biosynthesis transcriptional regulator SufR1e-1479.7
NC_016781:1169632:119046811904681191265798Corynebacterium pseudotuberculosis 3/99-5 chromosome, completeiron-sulfur cluster biosynthesis transcriptional regulator SufR2e-1479.3
NC_016799:1268706:133351513335151334171657Corynebacterium diphtheriae 31A chromosome, complete genomeDeoR family transcriptional regulator3e-1478.2
NC_016783:1274000:130235813023581303074717Corynebacterium diphtheriae INCA 402 chromosome, complete genomeDeoR family transcriptional regulator3e-1478.2
NC_016782:1251796:127806112780611278717657Corynebacterium diphtheriae 241 chromosome, complete genomeDeoR family transcriptional regulator4e-1477.8
NC_016785:1233384:125964812596481260304657Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeDeoR family transcriptional regulator4e-1477.8
NC_016786:1251765:127803012780301278686657Corynebacterium diphtheriae HC01 chromosome, complete genomeDeoR family transcriptional regulator4e-1477.8
NC_016787:1240000:126748012674801268136657Corynebacterium diphtheriae HC03 chromosome, complete genomeDeoR family transcriptional regulator4e-1477.8
NC_016790:1218596:124485912448591245515657Corynebacterium diphtheriae VA01 chromosome, complete genomeDeoR family transcriptional regulator4e-1477.8
NC_016800:1243000:130662813066281307284657Corynebacterium diphtheriae BH8 chromosome, complete genomeDeoR family transcriptional regulator4e-1477.8
NC_016802:1256287:127896212789621279618657Corynebacterium diphtheriae HC02 chromosome, complete genomeDeoR family transcriptional regulator4e-1477.8
NC_002935:1237585:130437113043711305087717Corynebacterium diphtheriae NCTC 13129, complete genomePutative DNA-binding protein1e-1376.3
NC_012522:7596039:762862976286297629378750Rhodococcus opacus B4, complete genomeputative SufR family transcriptional regulator2e-1375.5
NC_016789:1295918:132217713221771322833657Corynebacterium diphtheriae PW8 chromosome, complete genomeDeoR family transcriptional regulator5e-1374.3
NC_016788:1214026:127747012774701278126657Corynebacterium diphtheriae HC04 chromosome, complete genomeDeoR family transcriptional regulator5e-1374.3
NC_016801:1255611:132319213231921323848657Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeDeoR family transcriptional regulator1e-1273.2
NC_014643:2056280:210988921098892110713825Rothia dentocariosa ATCC 17931 chromosome, complete genomeArsR family transcriptional regulator2e-1065.9
NC_006461:605249:622356622356622958603Thermus thermophilus HB8, complete genomehypothetical protein3e-0962
NC_005835:259702:284517284517285119603Thermus thermophilus HB27, complete genomeprobable transcriptional regulator3e-0962
NC_017272:607900:625735625735626337603Thermus thermophilus SG0.5JP17-16 chromosome, complete genometranscriptional regulator TrmB7e-0960.5
NC_002945:1621765:164293216429321643738807Mycobacterium bovis AF2122/97, complete genometranscriptional regulatory protein2e-0859.3
NC_009565:1629780:165082316508231651629807Mycobacterium tuberculosis F11, complete genomehypothetical transcriptional regulatory protein2e-0858.9
NC_014032:374426:375256375256375900645Salinibacter ruber M8 chromosome, complete genometranscriptional regulator4e-0651.2