Pre_GI: BLASTP Hits

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Query: NC_004603:1897532:1916723 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1916723, End: 1916911, Length: 189

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013456:1743046:175023017502301750358129Vibrio sp. Ex25 chromosome 1, complete genomehypothetical protein2e-0961.6
NC_016446:26500:384043840438592189Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completehypothetical protein1e-0652
NC_012667:1045782:104819910481991048387189Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein1e-0652
NC_002506:298868:313335313335313523189Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completehypothetical protein1e-0652