Pre_GI: BLASTP Hits

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Query: NC_004603:1897532:1905641 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1905641, End: 1906186, Length: 546

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013456:1743046:176108317610831761628546Vibrio sp. Ex25 chromosome 1, complete genomehypothetical protein4e-96349
NC_012791:2233098:224119222411922241683492Variovorax paradoxus S110 chromosome 1, complete genomeGCN5-related N-acetyltransferase2e-24112
NC_002516:1474000:149495914949591495492534Pseudomonas aeruginosa PAO1, complete genomehypothetical protein6e-0960.5
NC_003366:981105:998264998264998752489Clostridium perfringens str. 13, complete genomehypothetical protein2e-0755.1
NC_008262:904000:925034925034925471438Clostridium perfringens SM101, complete genomeacetyltransferase, GNAT family3e-0651.6
NC_006322:1959918:196724719672471967765519Bacillus licheniformis ATCC 14580, complete genomehypothetical protein7e-0650.1