Pre_GI: BLASTP Hits

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Query: NC_004603:1115134:1115134 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1115134, End: 1115703, Length: 570

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013456:2528284:254424825442482544817570Vibrio sp. Ex25 chromosome 1, complete genomehypothetical protein3e-91333
AP010958:3787991:379045437904543791125672Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted outer membrane protein2e-0858.5
NC_010468:694943:714155714155714826672Escherichia coli ATCC 8739, complete genomehypothetical protein2e-0858.5
NC_012967:3113768:311401231140123114587576Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein3e-0858.5
NC_010473:3273882:327560732756073276182576Escherichia coli str. K-12 substr. DH10B, complete genomeconserved outer membrane protein3e-0858.5
NC_011748:3529930:352993035299303530505576Escherichia coli 55989, complete genomehypothetical protein3e-0858.5
NC_011750:3683760:368548536854853686060576Escherichia coli IAI39 chromosome, complete genomehypothetical protein3e-0858.5
CU928145:3529930:352993035299303530505576Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; putative outer membrane protein3e-0858.5
NC_000913:3176000:317786231778623178437576Escherichia coli K12, complete genomeconserved outer membrane protein3e-0858.5
NC_009800:3224575:322457532245753225246672Escherichia coli HS, complete genomehypothetical protein2e-0858.5
CP002516:693703:711591711591712262672Escherichia coli KO11, complete genomeprotein of unknown function DUF11902e-0858.5
CP002185:3393813:339381333938133394484672Escherichia coli W, complete genomeconserved outer membrane protein2e-0858.5
NC_016902:693703:711591711591712262672Escherichia coli KO11FL chromosome, complete genomehypothetical protein2e-0858.5
NC_016822:3485631:348726034872603487931672Shigella sonnei 53G, complete genomehypothetical protein2e-0858.5
NC_013364:3840000:384171138417113842382672Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-0858.5
NC_013361:4102894:410289441028944103565672Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-0858.5
NC_013353:3787991:379045437904543791125672Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-0858.5
NC_012947:708064:725952725952726623672Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-0858.5
NC_012759:3063285:306491430649143065585672Escherichia coli BW2952 chromosome, complete genomehypothetical protein2e-0858.5
NC_011415:3443851:344385134438513444522672Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-0858.5
NC_016612:627118:628736628736629404669Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein7e-0753.5