Pre_GI: BLASTP Hits

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Query: NC_004578:934867:952643 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 952643, End: 953524, Length: 882

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:1636875:1640953164095316431122160Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein4e-157553
NC_004129:5373886:5425475542547554276912217Pseudomonas fluorescens Pf-5, complete genomehypothetical protein2e-120431
NC_009656:4527457:4629139462913946313702232Pseudomonas aeruginosa PA7 chromosome, complete genomeTraG/TraD family protein9e-119426
NC_018080:5091772:5154147515414751563782232Pseudomonas aeruginosa DK2 chromosome, complete genomeTraG/TraD family protein1e-118426
NC_011662:1041725:1058794105879410609502157Thauera sp. MZ1T, complete genomehypothetical protein5e-115414
NC_011662:1058794:1058794105879410609502157Thauera sp. MZ1T, complete genomehypothetical protein5e-115414
NC_011901:2983555:2984093298409329862582166Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein6e-115413
NC_006513:1379735:1456939145693914590952157Azoarcus sp. EbN1, complete genomehypothetical protein1e-114412
NC_008782:2326439:2342331234233123444872157Acidovorax sp. JS42, complete genomehypothetical protein8e-113406
NC_015422:1876102:1877261187726118794172157Alicycliphilus denitrificans K601 chromosome, complete genomeconjugative coupling factor TraD1e-112405
NC_008344:49039:9427694276964502175Nitrosomonas eutropha C91, complete genomehypothetical protein2e-112405
NC_008825:2525380:2544905254490525470612157Methylibium petroleiphilum PM1, complete genomehypothetical protein4e-112404
NC_010170:1498253:1533811153381115359972187Bordetella petrii, complete genomeputative plasmid-transfer-protein4e-111401
NC_010002:4544818:4560799456079945629822184Delftia acidovorans SPH-1, complete genomehypothetical protein3e-111401
NC_010170:4533416:4533416453341645351431728Bordetella petrii, complete genomehypothetical protein2e-111401
NC_012912:483390:5132735132735154322160Dickeya zeae Ech1591, complete genomehypothetical protein2e-109395
NC_015379:2417312:2448780244878024509092130Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein4e-109394
NC_003919:2639080:2640736264073626424331698Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein8e-109393
NC_009138:1974935:2013321201332120155072187Herminiimonas arsenicoxydans, complete genomehypothetical protein2e-108392
NC_012691:2614603:2657994265799426601832190Tolumonas auensis DSM 9187, complete genomehypothetical protein1e-108392
NC_008752:558828:5705895705895727812193Acidovorax avenae subsp. citrulli AAC00-1, complete genomehypothetical protein1e-107389
NC_016830:3869572:3923203392320339253082106Pseudomonas fluorescens F113 chromosome, complete genomeprotein VirD45e-94344
NC_009708:4182460:4195489419548941976092121Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein1e-87322
NC_004547:611178:6262086262086283042097Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative plasmid transfer protein3e-87322
NC_016845:4539381:4539381453938145414802100Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,TraG-family protein1e-86320
NC_020181:3328844:3346044334604433480772034Enterobacter aerogenes EA1509E, complete genomeType IV secretory pathway, VirD4 components6e-86317
NC_015566:316340:3320983320983342122115Serratia sp. AS12 chromosome, complete genomeconjugative coupling factor TraD, SXT/TOL subfamily2e-85316
NC_015567:313035:3322633322633343772115Serratia sp. AS9 chromosome, complete genomeconjugative coupling factor TraD, SXT/TOL subfamily2e-85316
NC_009832:358291:3776443776443797582115Serratia proteamaculans 568, complete genomeputative plasmid transfer protein3e-85315
NC_014029:331919:3628313628313649452115Yersinia pestis Z176003 chromosome, complete genomehypothetical protein4e-85315
NC_013892:3278647:3300074330007433021372064Xenorhabdus bovienii SS-2004 chromosome, complete genomeplasmid transfer protein2e-84312
NC_014532:3555550:3577209357720935794132205Halomonas elongata DSM 2581, complete genomehypothetical protein2e-84312
NC_013892:1483000:1495028149502814970912064Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein1e-83309
NC_012731:600518:6155556155556175732019Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein1e-79296
NC_015572:2186394:2209094220909422111482055Methylomonas methanica MC09 chromosome, complete genomeconjugative coupling factor TraD, SXT/TOL subfamily4e-79295
NC_014228:3391500:3422946342294634251202175Xenorhabdus nematophila ATCC 19061, complete genomeputative plasmid transfer protein5e-79294
NC_011992:1234610:123536812353681236240873Acidovorax ebreus TPSY, complete genomehypothetical protein4e-78291
NC_005126:1223042:1245675124567512476331959Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-75283
NC_007484:667879:6784426784426805682127Nitrosococcus oceani ATCC 19707, complete genomehypothetical protein7e-76283
NC_011035:829945:8903968903968924382043Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeprotein TraD2e-70265
NC_016616:2699350:2721455272145527235482094Dechlorosoma suillum PS chromosome, complete genomeconjugative coupling factor TraD, TOL family4e-66251
NC_010554:2646806:2700609270060927024291821Proteus mirabilis HI4320, complete genomeplasmid conjugative transfer protein6e-30131
NC_010087:319063:3223693223693242371869Burkholderia multivorans ATCC 17616 chromosome 3, completeconserved hypothetical protein6e-28124
NC_015724:411860:4131604131604149861827Cupriavidus necator N-1 plasmid BB2p, complete sequencechannel-forming protein TraG6e-27121
NC_010682:1593108:1609469160946916113251857Ralstonia pickettii 12J chromosome 1, complete sequencehypothetical protein1e-26120
NC_005241:380415:3804153804153822801866Ralstonia eutropha H16 megaplasmid pHG1, complete sequencechannel-forming protein3e-25115
NC_015850:2048251:2065477206547720672311755Acidithiobacillus caldus SM-1 chromosome, complete genometype IV conjugative transfer system protein TraD6e-21101
NC_015422:2858228:2924276292427629261831908Alicycliphilus denitrificans K601 chromosome, complete genomeconjugative coupling factor TraD2e-2099.8
NC_007298:2769525:2797240279724027991471908Dechloromonas aromatica RCB, complete genomehypothetical protein1e-1997.1
NC_007950:206474:2222002222002241071908Polaromonas sp. JS666 plasmid 2, complete sequencehypothetical protein7e-1478.2