Pre_GI: BLASTP Hits

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Query: NC_004578:5623783:5645168 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5645168, End: 5646457, Length: 1290

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014804:401313:4197084197084209851278Thermococcus barophilus MP chromosome, complete genomeCytX-like hydroxymethylpyrimidine transporter protein2e-29130
NC_016048:2907702:2931702293170229329101209Oscillibacter valericigenes Sjm18-20, complete genomeputative permease6e-27122
NC_014205:842314:8763768763768776981323Staphylothermus hellenicus DSM 12710 chromosome, complete genomehydroxymethylpyrimidine transporter CytX9e-27121
NC_014364:773500:7910347910347922601227Spirochaeta smaragdinae DSM 11293 chromosome, complete genomepermease for cytosine/purines uracil thiamine allantoin5e-1789.4
NC_013410:1651000:1674051167405116752381188Fibrobacter succinogenes subsp. succinogenes S85 chromosome,cytosine/purines uracil thiamine allantoin permease1e-1068.2
NC_016605:50695:6430564305656781374Pediococcus claussenii ATCC BAA-344 chromosome, complete genomepermease for cytosine/purines, uracil, thiamine, allantoin family protein1e-0758.2
NC_008525:270310:2831742831742845381365Pediococcus pentosaceus ATCC 25745, complete genomePurine-cytosine permease related protein2e-0757