Pre_GI: BLASTP Hits

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Query: NC_004578:5336773:5381679 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5381679, End: 5383103, Length: 1425

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010322:5349000:5358502535850253599681467Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein3e-134479
NC_015633:2565753:2591438259143825927871350Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein7e-62238
NC_020209:4312892:433922743392274339952726Pseudomonas poae RE*1-1-14, complete genomephage integrase family protein8e-34145
NC_010322:1817598:1852561185256118539401380Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein2e-28127
NC_007951:1042291:1049518104951810510411524Burkholderia xenovorans LB400 chromosome 1, complete sequencehypothetical protein6e-24112
NC_009656:6224221:6261451626145162628241374Pseudomonas aeruginosa PA7 chromosome, complete genomesite-specific recombinase, phage integrase family protein2e-1790.5
NC_016783:1169821:118254811825481183483936Corynebacterium diphtheriae INCA 402 chromosome, complete genomesite-specific tyrosine recombinase XerD2e-0964.7
NC_015186:2197236:225468822546882255593906Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element4e-0859.7
NC_017208:3816753:384609438460943846993900Bacillus thuringiensis serovar chinensis CT-43 chromosome, completesite-specific tyrosine recombinase XerC6e-0756.2
NC_014171:3726054:372995937299593730858900Bacillus thuringiensis BMB171 chromosome, complete genomesite-specific tyrosine recombinase5e-0756.2
NC_014329:1041556:104443210444321045364933Corynebacterium pseudotuberculosis FRC41 chromosome, completetyrosine recombinase2e-0654.3
NC_016781:1039716:104442310444231045355933Corynebacterium pseudotuberculosis 3/99-5 chromosome, completetyrosine recombinase XerD2e-0654.3
NC_017031:1039548:104425510442551045187933Corynebacterium pseudotuberculosis P54B96 chromosome, completetyrosine recombinase XerD2e-0654.3
NC_017301:1037519:104406810440681045000933Corynebacterium pseudotuberculosis C231 chromosome, completetyrosine recombinase XerD2e-0654.3
NC_017303:1039562:104426910442691045201933Corynebacterium pseudotuberculosis I19 chromosome, complete genometyrosine recombinase XerD2e-0654.3
NC_017305:1037133:104184010418401042772933Corynebacterium pseudotuberculosis PAT10 chromosome, completetyrosine recombinase XerD2e-0654.3
NC_003909:3606177:362138136213813622280900Bacillus cereus ATCC 10987, complete genometyrosine recombinase4e-0653.1
NC_004547:3817656:3823518382351838245521035Erwinia carotovora subsp. atroseptica SCRI1043, complete genometyrosine recombinase5e-0653.1
NC_014721:2135500:215045321504532151325873Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeintegrase family protein5e-0652.8