Pre_GI: BLASTP Hits

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Query: NC_004578:5336773:5378945 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5378945, End: 5381041, Length: 2097

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010322:5349000:5355799535579953579012103Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein0764
NC_020209:4312892:4341256434125643433372082Pseudomonas poae RE*1-1-14, complete genomeintegrase family protein3e-98359
NC_015633:2565753:2593364259336425954902127Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein2e-58228
NC_010322:1817598:1854461185446118567132253Pseudomonas putida GB-1 chromosome, complete genomehypothetical protein6e-34146
NC_007951:1042291:1051515105151510537042190Burkholderia xenovorans LB400 chromosome 1, complete sequencehypothetical protein1e-1689
NC_002947:4167500:4177424417742441796102187Pseudomonas putida KT2440, complete genomehypothetical protein8e-1066.2
NC_018080:6048516:6087387608738760893511965Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein1e-0862.4