Pre_GI: BLASTP Hits

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Query: NC_004578:5336773:5336773 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5336773, End: 5337702, Length: 930

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013855:196778:210834210834211763930Azospirillum sp. B510 plasmid pAB510a, complete sequencecoronamic acid synthetase2e-138492
NC_007435:191821:1951251951251961891065Burkholderia pseudomallei 1710b chromosome II, complete sequenceCmaB3e-105381
NC_012997:3185248:320285232028523203763912Teredinibacter turnerae T7901, complete genomechlorinating enzyme2e-104379
NC_008543:323773:323773323773324768996Burkholderia cenocepacia HI2424 chromosome 2, complete sequencechlorinating enzyme1e-91336
NC_014121:4043198:405349840534984054439942Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completechlorinating enzyme4e-88324
NC_002947:4293252:431028743102874311222936Pseudomonas putida KT2440, complete genomehypothetical protein7e-66250
NC_017030:3091313:312679131267913127705915Corallococcus coralloides DSM 2259 chromosome, complete genomechlorinating enzyme2e-60232
NC_016935:2256000:228549522854952286238744Paenibacillus mucilaginosus 3016 chromosome, complete genomephytanoyl-CoA dioxygenase3e-1479.3
NC_015690:1726000:175545117554511756194744Paenibacillus mucilaginosus KNP414 chromosome, complete genomephytanoyl-CoA dioxygenase3e-1479.3
NC_015703:3842144:386515838651583865946789Runella slithyformis DSM 19594 chromosome, complete genomephytanoyl-CoA dioxygenase2e-0963.5
NC_008312:4731692:475278247527824753627846Trichodesmium erythraeum IMS101, complete genomePhytanoyl-CoA dioxygenase5e-0962
NC_012914:569471:602538602538603371834Paenibacillus sp. JDR-2, complete genomePhytanoyl-CoA dioxygenase8e-0961.2
NC_011983:760113:779101779101779877777Agrobacterium radiobacter K84 chromosome 2, complete genomeepoxidase subunit A2e-0653.5