Pre_GI: BLASTP Hits

Some Help

Query: NC_004578:3817330:3818856 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3818856, End: 3819920, Length: 1065

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008781:1038158:1038158103815810393421185Polaromonas naphthalenivorans CJ2, complete genomeprotein of unknown function UPF01183e-99362
NC_008260:2961291:2973948297394829750691122Alcanivorax borkumensis SK2, complete genomehypothetical protein1e-82306
NC_015567:2125415:2137775213777521388871113Serratia sp. AS9 chromosome, complete genomehypothetical protein2e-79296
NC_015566:2125403:2137763213776321388751113Serratia sp. AS12 chromosome, complete genomehypothetical protein2e-79296
NC_009485:7626677:7649691764969176507521062Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein2e-78293
NC_009832:2211154:2243817224381722449381122Serratia proteamaculans 568, complete genomeprotein of unknown function UPF01182e-78292
NC_013173:953633:9830699830699841661098Desulfomicrobium baculatum DSM 4028, complete genomeprotein of unknown function UPF01185e-78291
NC_016612:5600177:5623751562375156248571107Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein9e-77287
NC_014562:469154:4873444873444885821239Pantoea vagans C9-1 chromosome, complete genomeUPF0118 inner membrane protein ydiK3e-75282
NC_004547:138500:1414491414491427651317Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein3e-75281
NC_014121:1101093:1130749113074911318581110Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein4e-75281
NC_016514:891772:9279919279919293131323Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YdiK7e-75281
NC_012917:4646491:4658304465830446595241221Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein2e-74280
NC_013716:1138441:1166182116618211672941113Citrobacter rodentium ICC168, complete genomeputative outer membrane protein2e-72273
NC_016112:2903767:2910845291084529118941050Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein3e-56219
NC_013851:949973:9750569750569762611206Allochromatium vinosum DSM 180 chromosome, complete genomeprotein of unknown function UPF01184e-42172
NC_014844:2158318:2160495216049521615951101Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomehypothetical protein5e-27122
NC_007955:2531751:2538437253843725394741038Methanococcoides burtonii DSM 6242, complete genomeprotein of unknown function UPF01186e-26118
NC_011184:2369662:2394686239468623957711086Vibrio fischeri MJ11 chromosome I, complete sequencehypothetical membrane spanning protein2e-25116
NC_013960:1587761:1600461160046116015371077Nitrosococcus halophilus Nc4 chromosome, complete genomeprotein of unknown function UPF01181e-24114
NC_014297:476510:5176585176585188031146Halalkalicoccus jeotgali B3 chromosome, complete genomehypothetical protein9e-22104
NC_013922:331847:3894213894213906981278Natrialba magadii ATCC 43099 chromosome, complete genomeprotein of unknown function UPF01188e-2098.2
NC_019908:121178:1349301349301361141185Brachyspira pilosicoli P43/6/78 chromosome, complete genomehypothetical protein1e-1790.5
NC_018604:1943561:1963759196375919649431185Brachyspira pilosicoli WesB complete genomemembrane protein2e-1790.5
NC_014330:505412:5286525286525298361185Brachyspira pilosicoli 95/1000 chromosome, complete genomehypothetical protein2e-1790.5
NC_018607:921923:9352159352159363991185Brachyspira pilosicoli B2904 chromosome, complete genomemembrane protein5e-1789
NC_010170:4739925:4762687476268747638561170Bordetella petrii, complete genomehypothetical protein6e-1788.6
NC_012587:128845:1288451288451300201176Rhizobium sp. NGR234, complete genomepredicted transmembrane protein3e-1686.3
NC_014774:605085:6290106290106300951086Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completeABC transporter permease3e-1686.3
NC_012438:565419:5654195654195664831065Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomemembrane protein5e-1685.5
NC_014002:1408085:1419640141964014206621023Methanohalophilus mahii DSM 5219 chromosome, complete genomeprotein of unknown function UPF01188e-1685.1
NC_018000:1207231:1216930121693012180421113Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein3e-1583.2
NC_018000:2054098:2059333205933320604091077Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein1e-1480.9
NC_010552:1212000:1227991122799112290611071Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceprotein of unknown function UPF01187e-1478.6
NC_014408:1455851:1468657146865714696641008Methanothermobacter marburgensis str. Marburg chromosome, completehypothetical protein3e-1376.3
NC_003047:536151:5361515361515373291179Sinorhizobium meliloti 1021, complete genomePUTATIVE PERMEASE TRANSMEMBRANE TRANSPORT PROTEIN6e-1375.1
NC_010623:188143:2075592075592086441086Burkholderia phymatum STM815 chromosome 2, complete sequenceprotein of unknown function UPF01184e-1272.4
NC_009714:671897:6762786762786773361059Campylobacter hominis ATCC BAA-381, complete genomeacid membrane antigen A4e-1169.3
NC_015680:369777:379213379213380193981Pyrococcus yayanosii CH1 chromosome, complete genomehypothetical protein6e-1065.5
NC_008577:3485878:3484779348477934858881110Shewanella sp. ANA-3 chromosome 1, complete sequenceprotein of unknown function UPF01188e-1065.1
NC_000961:888000:9081799081799092461068Pyrococcus horikoshii OT3, complete genomehypothetical protein2e-0963.5
NC_020304:1222000:1236581123658112377561176Desulfocapsa sulfexigens DSM 10523, complete genomeputative permease3e-0963.2
NC_010508:1865602:1876517187651718776891173Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceprotein of unknown function UPF01184e-0962.8
NC_016632:830000:8473928473928484741083Serratia symbiotica str. 'Cinara cedri' chromosome, completehypothetical protein6e-0962
NC_016629:3496630:3521457352145735225331077Desulfovibrio africanus str. Walvis Bay chromosome, completehypothetical protein7e-0962
NC_008313:2629281:2631992263199226330951104Ralstonia eutropha H16 chromosome 1, complete sequencepredicted permease8e-0961.6
NC_013156:127000:1443011443011453021002Methanocaldococcus fervens AG86, complete genomeprotein of unknown function UPF01182e-0860.5
NC_013194:634039:6531566531566542741119Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeprotein of unknown function UPF01187e-0858.5
NC_015410:2505168:2522702252270225237871086Pseudomonas mendocina NK-01 chromosome, complete genomehypothetical protein1e-0757.4
NC_015416:2723189:2726903272690327281291227Methanosaeta concilii GP-6 chromosome, complete genomehypothetical protein5e-0652.4
NC_010545:619346:6344116344116356761266Corynebacterium urealyticum DSM 7109, complete genomehypothetical protein7e-0652