Pre_GI: BLASTP Hits

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Query: NC_004578:3193490:3200905 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3200905, End: 3201393, Length: 489

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004129:3452885:348754934875493488028480Pseudomonas fluorescens Pf-5, complete genomeProtein of unknown function (DUF461) family2e-42171
NC_015733:2194676:219975321997532200235483Pseudomonas putida S16 chromosome, complete genomehypothetical protein1e-36151
NC_010002:2933909:295819129581912958670480Delftia acidovorans SPH-1, complete genomeprotein of unknown function DUF4619e-29125
NC_013194:2020134:202114220211422021612471Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeprotein of unknown function DUF4611e-24112
NC_007404:2743877:276614627661462766595450Thiobacillus denitrificans ATCC 25259, complete genomehypothetical protein1e-1995.1
NC_013016:1441424:146114914611491461622474Neisseria meningitidis alpha14 chromosome, complete genomehypothetical protein1e-1685.9
NC_009659:3520093:354573035457303546212483Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein8e-1372.8
NC_014010:1020488:106047110604711060971501Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeconserved hypothetical protein; putative signal peptide1e-0962.4
NC_010172:1522707:1546630154663015477271098Methylobacterium extorquens PA1, complete genomeprotein of unknown function DUF4615e-0960.1
NC_010510:310938:319157319157320113957Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeprotein of unknown function DUF4612e-0858.5
NC_011313:871445:873183873183873629447Aliivibrio salmonicida LFI1238 chromosome 2, complete sequencehypothetical protein3e-0857.8
NC_008344:49039:810588105881552495Nitrosomonas eutropha C91, complete genomeprotein of unknown function DUF4612e-0754.7
NC_014010:1392536:139920113992011399665465Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeprotein of unknown function DUF4613e-0754.3
NC_015637:669593:688538688538688981444Vibrio anguillarum 775 chromosome chromosome II, complete sequencehypothetical protein3e-0651.2
NC_013525:556036:570849570849571358510Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomeprotein of unknown function DUF4613e-0651.2
NC_011666:2259447:227820122782012278698498Methylocella silvestris BL2, complete genomeprotein of unknown function DUF4619e-0649.7