Pre_GI: BLASTP Hits

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Query: NC_004578:2560473:2563001 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 2563001, End: 2564467, Length: 1467

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010322:1817598:1820058182005818215151458Pseudomonas putida GB-1 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase0790
NC_007614:2675302:2692495269249526941411647Nitrosospira multiformis ATCC 25196 chromosome 1, completeD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase4e-80299
NC_014910:4316706:4336629433662943381011473Alicycliphilus denitrificans BC chromosome, complete genomed-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase2e-72273
NC_012968:435532:4589044589044603371434Methylotenera mobilis JLW8, complete genomeD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase1e-69264
NC_014935:1955226:1983525198352519849251401Nitratifractor saLSUginis DSM 16511 chromosome, complete genomed-alanyl-d-alaninecarboxypeptidase/ d-alanyl-d-alanine-endopeptidase2e-55217
NC_017515:1855114:1855114185511418565231410Neisseria meningitidis M04-240196 chromosome, complete genomeserine-type D-Ala-D-Ala carboxypeptidase2e-55217
NC_017517:1807072:1851638185163818530471410Neisseria meningitidis M01-240355 chromosome, complete genomeserine-type D-Ala-D-Ala carboxypeptidase1e-55217
NC_017501:1863417:1866030186603018674391410Neisseria meningitidis 8013, complete genomeD-alanyl-D-alanine carboxypeptidase (DD-peptidase; DD-carboxypeptidase)3e-54213
NC_020209:397376:3973763973763988301455Pseudomonas poae RE*1-1-14, complete genomeputative penicillin-binding exported protein8e-34145
NC_018524:2423016:2423016242301624246231608Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase2e-31137
NC_012880:3915500:3929553392955339309921440Dickeya dadantii Ech703, complete genomeD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase1e-30134
NC_014210:5370868:5371880537188053735171638Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D- alanine-endopeptidase4e-29129
NC_009053:1081651:1085816108581610872581443Actinobacillus pleuropneumoniae L20, complete genomepenicillin-binding protein 4 precursor1e-28128
NC_010278:1045884:1050049105004910514911443Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,D-alanyl-D-alanine carboxypeptidase2e-28127
NC_013716:4885776:4892360489236048937931434Citrobacter rodentium ICC168, complete genomepenicillin-binding protein 4 [includes: D-alanyl-D-alanine carboxypeptidase; D-alanyl-D-alanine-endopeptidase]6e-26119
NC_013416:939668:9396689396689411101443Aggregatibacter actinomycetemcomitans D11S-1, complete genomeD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase1e-25118
NC_015968:4117835:4161425416142541628581434Enterobacter asburiae LF7a chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase2e-24114
NC_015713:2453409:2462431246243124638401410Simkania negevensis Z chromosome gsn.131, complete genomeD-alanyl-D-alanine carboxypeptidase dacC2e-24114
NC_014532:3479674:3500521350052135019841464Halomonas elongata DSM 2581, complete genomeD-alanyl-D-alaninecarboxypeptidase/D-alanyl-D- ala nine-endopeptidase1e-1585.1
NC_014933:979063:9825199825199839491431Bacteroides helcogenes P 36-108 chromosome, complete genomeD-alanyl-D-alaninecarboxypeptidase/D-alanyl-D- alanine-endopeptidase1e-1584.7
NC_014033:2410331:2410331241033124115601230Prevotella ruminicola 23 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase5e-1582.8
NC_013739:5535945:5539027553902755405801554Conexibacter woesei DSM 14684, complete genomeD-alanyl-D-alaninecarboxypeptidase/D-alanyl-D- alanine-endopeptidase9e-1375.5
NC_007516:1283210:1281906128190612832131308Synechococcus sp. CC9605, complete genomeD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase6e-1272.4
NC_009614:1461628:1475275147527514766751401Bacteroides vulgatus ATCC 8482 chromosome, complete genomeexported D-alanyl-D-alanine carboxypeptidase penicillin-binding protein3e-1170.1