Pre_GI: BLASTP Hits

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Query: NC_004578:212468:235527 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 235527, End: 236402, Length: 876

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008767:1739344:174109617410961741980885Neisseria meningitidis FAM18, complete genomeputative integral membrane protein6e-35147
NC_012483:2338392:234606723460672346966900Acidobacterium capsulatum ATCC 51196, complete genomemembrane protein6e-1685.1
NC_014618:2705769:271783827178382718752915Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein4e-1272.4
NC_017208:256163:299415299415300335921Bacillus thuringiensis serovar chinensis CT-43 chromosome, completedrug/metabolite exporter family2e-1066.2
NC_015663:5253242:527374652737465274642897Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein7e-1064.7
NC_021182:1188000:119757811975781198474897Clostridium pasteurianum BC1, complete genomeDMT(drug/metabolite transporter) superfamily permease1e-0963.5
NC_008390:2448379:246543324654332466341909Burkholderia cepacia AMMD chromosome 1, complete sequenceprotein of unknown function DUF6, transmembrane2e-0962.8
NC_014171:261952:309552309552310472921Bacillus thuringiensis BMB171 chromosome, complete genomedrug/metabolite exporter family protein7e-0961.6
NC_014974:404015:405808405808406638831Thermus scotoductus SA-01 chromosome, complete genometransporter1e-0757.8
NC_016845:2691129:271174827117482712674927Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein6e-0755.1
NC_017278:1873934:189052618905261891356831Thermus sp. CCB_US3_UF1 chromosome, complete genomeTransporter7e-0754.7
NC_012731:2650603:267120226712022672116915Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein8e-0754.7
NC_009648:1914621:193522119352211936135915Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein1e-0654.3
NC_009348:2631759:264695426469542647850897Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein3e-0652.4
NC_003909:927955:941809941809942720912Bacillus cereus ATCC 10987, complete genometransporter, EamA family4e-0652.4
NC_015663:1869000:189421518942151895126912Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein7e-0651.2
NC_014844:1634985:164054116405411641428888Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomehypothetical protein8e-0651.2
NC_011772:3259483:327686232768623277746885Bacillus cereus G9842, complete genometransporter, EamA family9e-0651.2