Pre_GI: BLASTP Hits

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Query: NC_004578:20738:36881 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 36881, End: 38767, Length: 1887

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020829:1:3009030090320181929Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein7e-58225
NC_020209:4768500:4792377479237747942991923Pseudomonas poae RE*1-1-14, complete genomehypothetical protein1e-55218
NC_011662:1:2502325023266331611Thauera sp. MZ1T, complete genomehypothetical protein5e-45182
NC_015572:1:1800918009197301722Methylomonas methanica MC09 chromosome, complete genomeregulatory protein MerR7e-1996.3
NC_010501:1:1105611056129721917Pseudomonas putida W619, complete genomehypothetical protein1e-1585.5
NC_002947:8394:2019820198221141917Pseudomonas putida KT2440, complete genomehypothetical protein1e-1585.5
NC_009512:1:1103611036129521917Pseudomonas putida F1, complete genomehypothetical protein1e-1585.5
NC_010322:1:1181811818137341917Pseudomonas putida GB-1 chromosome, complete genomehypothetical protein1e-1585.5
NC_015572:1:4560745607474631857Methylomonas methanica MC09 chromosome, complete genomehypothetical protein1e-1585.5
NC_014539:1:2137821378233091932Burkholderia sp. CCGE1003 chromosome 1, complete sequencehypothetical protein6e-1583.2
NC_009659:892272:907474907474908118645Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein1e-1275.1
NC_012968:63898:7823378233801311899Methylotenera mobilis JLW8, complete genomehypothetical protein1e-1275.1
NC_011992:1968258:1978488197848819800021515Acidovorax ebreus TPSY, complete genomehypothetical protein1e-1172.4
NC_011566:1016858:1015629101562910168641236Shewanella piezotolerans WP3, complete genomehypothetical protein5e-1170.1
NC_014307:2760347:277174827717482772740993Ralstonia solanacearum CFBP2957 chromosome, complete genomehypothetical protein3e-1067.8
NC_010515:2111691:2131163213116321322541092Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencehypothetical protein3e-1067.4
NC_007509:3668:285622856229530969Burkholderia sp. 383 chromosome 3, complete sequencehypothetical protein3e-1067.4
NC_009659:3384997:3402513340251334036701158Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein8e-1065.9
NC_008061:190287:208232208232209173942Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencehypothetical protein3e-0964.3
NC_007520:407627:4234734234734249391467Thiomicrospira crunogena XCL-2, complete genomehypothetical protein5e-0860.1
NC_008577:4611431:4630350463035046315821233Shewanella sp. ANA-3 chromosome 1, complete sequencehypothetical protein7e-0756.2
NC_016616:915755:9380189380189390341017Dechlorosoma suillum PS chromosome, complete genomehypothetical protein3e-0653.9