Pre_GI: BLASTP Hits

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Query: NC_004578:20738:35933 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 35933, End: 36868, Length: 936

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020829:1:291952919530103909Pseudomonas denitrificans ATCC 13867, complete genometransposition helper protein2e-28126
NC_020209:4768500:479152847915284792364837Pseudomonas poae RE*1-1-14, complete genometransposition helper protein8e-27121
NC_011662:1:2381123811248181008Thauera sp. MZ1T, complete genomehypothetical protein4e-25115
NC_009659:3384997:3401458340145834025161059Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein2e-1893.2
NC_015572:1:446364463645610975Methylomonas methanica MC09 chromosome, complete genomeTniB family protein2e-1480.5
NC_012968:63898:7721477214782301017Methylotenera mobilis JLW8, complete genomeTniB family protein6e-1375.1
NC_007509:3668:276572765728565909Burkholderia sp. 383 chromosome 3, complete sequencehypothetical protein9e-1167.8
NC_016002:1975000:199457619945761995505930Pseudogulbenkiania sp. NH8B, complete genomeTniB family protein6e-1065.1
NC_009997:2635025:265354826535482654462915Shewanella baltica OS195, complete genomeAAA ATPase5e-1065.1
NC_016901:2594942:261346526134652614379915Shewanella baltica OS678 chromosome, complete genomeTniB family protein5e-1065.1
NC_007520:407627:424946424946425938993Thiomicrospira crunogena XCL-2, complete genomehypothetical protein6e-0961.6
NC_019973:6102442:612372361237236124718996Mesorhizobium australicum WSM2073, complete genomeTniB protein2e-0860.1
NC_014539:1:2036520365213811017Burkholderia sp. CCGE1003 chromosome 1, complete sequenceTniB family protein3e-0859.7
NC_010322:1:107831078311742960Pseudomonas putida GB-1 chromosome, complete genomeAAA ATPase3e-0756.2
NC_002947:8394:191631916320122960Pseudomonas putida KT2440, complete genomeGTP-binding protein, putative3e-0756.2
NC_009512:1:100011000110960960Pseudomonas putida F1, complete genomeAAA ATPase3e-0756.2
NC_010501:1:100211002110980960Pseudomonas putida W619, complete genomeAAA ATPase3e-0756.2
NC_015572:1:155901559016564975Methylomonas methanica MC09 chromosome, complete genomeTniB family protein4e-0652.4