Pre_GI: BLASTP Hits

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Query: NC_004578:1153738:1169280 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 1169280, End: 1169678, Length: 399

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:4408325:443031944303194430708390Pseudomonas putida F1, complete genomeGtrA family protein9e-48188
NC_013406:6494079:650555065055506505930381Paenibacillus sp. Y412MC10 chromosome, complete genomeGtrA family protein5e-1786.7
NC_010688:4235528:424193042419304242370441Xanthomonas campestris pv. campestris, complete genomehypothetical protein2e-1580.9
NC_007086:4293405:430075243007524301207456Xanthomonas campestris pv. campestris str. 8004, complete genomesugar translocase3e-1580.5
NC_003902:714478:737829737829738284456Xanthomonas campestris pv. campestris str. ATCC 33913, completesugar translocase3e-1580.5
NC_007508:4283750:429108742910874291608522Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative membrane protein involved in synthesis of cell surface polysaccharides1e-1478.2
NC_017271:770000:789965789965790276312Xanthomonas campestris pv. raphani 756C chromosome, completesugar translocase1e-1065.1
NC_003888:7028165:7035788703578870372241437Streptomyces coelicolor A3(2), complete genomesugar transferase8e-0752.4
NC_014376:597000:624677624677625165489Clostridium saccharolyticum WM1 chromosome, complete genomeGtrA family protein9e-0752.4
NC_008789:1669082:168945216894521689883432Halorhodospira halophila SL1, complete genomehypothetical protein9e-0752.4
NC_008639:378181:386294386294386677384Chlorobium phaeobacteroides DSM 266, complete genomeGtrA family protein2e-0651.2
NC_015428:700479:719202719202719609408Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeGtrA family protein5e-0650.1
NC_015942:2943127:295860129586012959017417Acidithiobacillus ferrivorans SS3 chromosome, complete genomehypothetical protein5e-0649.7