Pre_GI: BLASTP Hits

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Query: NC_004547:611178:626208 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 626208, End: 628304, Length: 2097

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015566:316340:3320983320983342122115Serratia sp. AS12 chromosome, complete genomeconjugative coupling factor TraD, SXT/TOL subfamily01090
NC_015567:313035:3322633322633343772115Serratia sp. AS9 chromosome, complete genomeconjugative coupling factor TraD, SXT/TOL subfamily01090
NC_014029:331919:3628313628313649452115Yersinia pestis Z176003 chromosome, complete genomehypothetical protein01086
NC_009832:358291:3776443776443797582115Serratia proteamaculans 568, complete genomeputative plasmid transfer protein01083
NC_013892:1483000:1495028149502814970912064Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein01070
NC_013892:3278647:3300074330007433021372064Xenorhabdus bovienii SS-2004 chromosome, complete genomeplasmid transfer protein01058
NC_014228:3391500:3422946342294634251202175Xenorhabdus nematophila ATCC 19061, complete genomeputative plasmid transfer protein01041
NC_009708:4182460:4195489419548941976092121Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein0954
NC_016845:4539381:4539381453938145414802100Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,TraG-family protein0951
NC_005126:1223042:1245675124567512476331959Photorhabdus luminescens subsp. laumondii TTO1, complete genome0946
NC_015379:2417312:2448780244878024509092130Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein0853
NC_012691:2614603:2657994265799426601832190Tolumonas auensis DSM 9187, complete genomehypothetical protein0843
NC_016830:3869572:3923203392320339253082106Pseudomonas fluorescens F113 chromosome, complete genomeprotein VirD40840
NC_011901:2983555:2984093298409329862582166Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein0837
NC_008752:558828:5705895705895727812193Acidovorax avenae subsp. citrulli AAC00-1, complete genomehypothetical protein0837
NC_008344:49039:9427694276964502175Nitrosomonas eutropha C91, complete genomehypothetical protein0836
NC_009138:1974935:2013321201332120155072187Herminiimonas arsenicoxydans, complete genomehypothetical protein0835
NC_015422:1876102:1877261187726118794172157Alicycliphilus denitrificans K601 chromosome, complete genomeconjugative coupling factor TraD0834
NC_011662:1041725:1058794105879410609502157Thauera sp. MZ1T, complete genomehypothetical protein0833
NC_011662:1058794:1058794105879410609502157Thauera sp. MZ1T, complete genomehypothetical protein0833
NC_010002:4544818:4560799456079945629822184Delftia acidovorans SPH-1, complete genomehypothetical protein0832
NC_008782:2326439:2342331234233123444872157Acidovorax sp. JS42, complete genomehypothetical protein0832
NC_010170:1498253:1533811153381115359972187Bordetella petrii, complete genomeputative plasmid-transfer-protein0831
NC_008825:2525380:2544905254490525470612157Methylibium petroleiphilum PM1, complete genomehypothetical protein0826
NC_006513:1379735:1456939145693914590952157Azoarcus sp. EbN1, complete genomehypothetical protein0819
NC_012912:483390:5132735132735154322160Dickeya zeae Ech1591, complete genomehypothetical protein0818
NC_007005:1636875:1640953164095316431122160Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein0816
NC_004129:5373886:5425475542547554276912217Pseudomonas fluorescens Pf-5, complete genomehypothetical protein0801
NC_014532:3555550:3577209357720935794132205Halomonas elongata DSM 2581, complete genomehypothetical protein0791
NC_012731:600518:6155556155556175732019Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein0785
NC_009656:4527457:4629139462913946313702232Pseudomonas aeruginosa PA7 chromosome, complete genomeTraG/TraD family protein0784
NC_018080:5091772:5154147515414751563782232Pseudomonas aeruginosa DK2 chromosome, complete genomeTraG/TraD family protein0778
NC_015572:2186394:2209094220909422111482055Methylomonas methanica MC09 chromosome, complete genomeconjugative coupling factor TraD, SXT/TOL subfamily0750
NC_020181:3328844:3346044334604433480772034Enterobacter aerogenes EA1509E, complete genomeType IV secretory pathway, VirD4 components0743
NC_007484:667879:6784426784426805682127Nitrosococcus oceani ATCC 19707, complete genomehypothetical protein0743
NC_003919:2639080:2640736264073626424331698Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein0703
NC_010170:4533416:4533416453341645351431728Bordetella petrii, complete genomehypothetical protein0696
NC_016616:2699350:2721455272145527235482094Dechlorosoma suillum PS chromosome, complete genomeconjugative coupling factor TraD, TOL family5e-167588
NC_011035:829945:8903968903968924382043Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeprotein TraD5e-163575
NC_014228:3391500:3399836339983634021752340Xenorhabdus nematophila ATCC 19061, complete genome9e-104378
NC_004578:934867:952643952643953524882Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-90333
NC_011992:1234610:123536812353681236240873Acidovorax ebreus TPSY, complete genomehypothetical protein5e-69262
NC_010682:1593108:1609469160946916113251857Ralstonia pickettii 12J chromosome 1, complete sequencehypothetical protein6e-69262
NC_010554:2646806:2700609270060927024291821Proteus mirabilis HI4320, complete genomeplasmid conjugative transfer protein2e-68260
NC_015422:2858228:2924276292427629261831908Alicycliphilus denitrificans K601 chromosome, complete genomeconjugative coupling factor TraD7e-63242
NC_010087:319063:3223693223693242371869Burkholderia multivorans ATCC 17616 chromosome 3, completeconserved hypothetical protein2e-62241
NC_015724:411860:4131604131604149861827Cupriavidus necator N-1 plasmid BB2p, complete sequencechannel-forming protein TraG9e-62238
NC_005241:380415:3804153804153822801866Ralstonia eutropha H16 megaplasmid pHG1, complete sequencechannel-forming protein9e-60232
NC_007298:2769525:2797240279724027991471908Dechloromonas aromatica RCB, complete genomehypothetical protein6e-59229
NC_015850:2048251:2065477206547720672311755Acidithiobacillus caldus SM-1 chromosome, complete genometype IV conjugative transfer system protein TraD9e-57222
NC_007950:206474:2222002222002241071908Polaromonas sp. JS666 plasmid 2, complete sequencehypothetical protein2e-46187
NC_010170:4533416:453492945349294535600672Bordetella petrii, complete genomehypothetical protein7e-33142
NC_003919:2639080:264026226402622640660399Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein1e-23112
NC_002939:2315402:2340674234067423420681395Geobacter sulfurreducens PCA, complete genomeTraG family protein7e-2099.4
NC_002939:2337402:2340674234067423420681395Geobacter sulfurreducens PCA, complete genomeTraG family protein7e-2099.4
NC_014836:1551965:1574585157458515759671383Desulfurispirillum indicum S5 chromosome, complete genomeDNA transfer in the process of conjugation and F pilus assembly protein2e-1688.2
NC_014972:3604534:360670036067003607692993Desulfobulbus propionicus DSM 2032 chromosome, complete genome3e-1584.3
NC_014228:2270000:231236723123672313140774Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein; putative membrane protein6e-1376.6
NC_005126:1223042:124910812491081249329222Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-0758.5