Pre_GI: BLASTP Hits

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Query: NC_004547:3207776:3241658 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 3241658, End: 3242011, Length: 354

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004547:1873390:191393419139341914218285Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein9e-28122
NC_013421:1696746:170817517081751708459285Pectobacterium wasabiae WPP163, complete genomeConjugal transfer TraD family protein6e-27119
NC_011745:2209288:224758422475842247907324Escherichia coli ED1a chromosome, complete genomehypothetical protein1e-23108
NC_011149:1987291:200377320037732004078306Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein2e-1787.8
NC_011294:2053991:206954620695462069851306Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-1582
NC_011205:2180598:219656321965632196868306Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-1582
NC_004431:2185750:220025322002532200567315Escherichia coli CFT073, complete genomehypothetical protein2e-1580.9
NC_013716:2139952:215013321501332150438306Citrobacter rodentium ICC168, complete genomehypothetical protein2e-1580.9
NC_008253:1938975:195340819534081953713306Escherichia coli 536, complete genomehypothetical protein3e-1580.5
NC_016831:947281:973567973567973866300Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein5e-1579.7
NC_011274:2044000:206067320606732060972300Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein5e-1579.7
NC_011601:2139188:216224821622482162553306Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein5e-1579.7