Pre_GI: BLASTP Hits

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Query: NC_004547:1970686:1989132 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 1989132, End: 1989221, Length: 90

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:3117639:31257093125709312579890Pectobacterium wasabiae WPP163, complete genometRNA-Ser4e-0960.1
NC_012917:2921932:29259772925977292606690Pectobacterium carotovorum subsp. carotovorum PC1, complete genometRNA-Ser4e-0960.1
NC_014500:3023762:30311823031182303127190Dickeya dadantii 3937 chromosome, complete genometRNA-Ser3e-0857
NC_013592:1730505:17543831754383175447290Dickeya dadantii Ech586, complete genometRNA-Ser1e-0755.1
NC_012912:1788308:18170891817089181717890Dickeya zeae Ech1591, complete genometRNA-Ser1e-0755.1
NC_009439:2337024:23382122338212233830190Pseudomonas mendocina ymp, complete genometRNA-Ser8e-0752.4
NC_007005:2149275:21619072161907216199690Pseudomonas syringae pv. syringae B728a, complete genometRNA-Ser3e-0650.4
NC_015410:2838132:28601222860122286020887Pseudomonas mendocina NK-01 chromosome, complete genometRNA-Ser4e-0650.1
NC_017047:1796000:17966461796646179673590Rahnella aquatilis HX2 chromosome, complete genometRNA-Ser5e-0649.7
NC_017047:1796000:17960761796076179616590Rahnella aquatilis HX2 chromosome, complete genometRNA-Ser5e-0649.7