Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3878282 Shigella flexneri 2a str. 301, complete genome

Start: 3878282, End: 3879160, Length: 879

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:1094000:111235911123591113237879Escherichia coli SMS-3-5, complete genome2-dehydro-3-deoxygalactonokinase8e-169592
NC_015061:2927707:293093229309322931828897Rahnella sp. Y9602 chromosome, complete genome2-dehydro-3-deoxygalactonokinase2e-79295
NC_017047:2957957:296118129611812962077897Rahnella aquatilis HX2 chromosome, complete genome2-oxo-3-deoxygalactonate kinase1e-78293
NC_014550:3534000:354943835494383550430993Arthrobacter arilaitensis Re117, complete genome2-dehydro-3-deoxygalactonokinase3e-36152
NC_011740:3739395:3738476373847637394801005Escherichia fergusonii ATCC 35469, complete genomeacidic carbohydrate kinase4e-35148
NC_007908:1010162:101252710125271013417891Rhodoferax ferrireducens T118, complete genome2-dehydro-3-deoxygalactonokinase8e-33140
NC_020911:3046916:306664830666483067562915Octadecabacter antarcticus 307, complete genome2-dehydro-3-deoxygalactonokinase8e-32137
NC_014006:611592:610663610663611595933Sphingobium japonicum UT26S chromosome 1, complete genome2-dehydro-3-deoxygalactonokinase5e-27121
NC_008043:499399:522127522127523041915Silicibacter sp. TM1040 mega plasmid, complete sequence2-keto-3-deoxy-galactonokinase6e-23108