Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3867907 Shigella flexneri 2a str. 301, complete genome

Start: 3867907, End: 3868266, Length: 360

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015968:4790239:481217448121744812533360Enterobacter asburiae LF7a chromosome, complete genomeribonuclease P protein component2e-60231
NC_020260:3931567:393605139360513936410360Cronobacter sakazakii Sp291, complete genomeribonuclease P1e-59228
NC_009092:4585784:460175346017534602115363Shewanella loihica PV-4, complete genomeribonuclease P protein component7e-32135
NC_007292:1:142951429514654360Candidatus Blochmannia pennsylvanicus str. BPEN, complete genomeRNase P, protein component2e-24110
NC_010322:1:44408405Pseudomonas putida GB-1 chromosome, complete genomeribonuclease P2e-22103
NC_002947:8394:839483948798405Pseudomonas putida KT2440, complete genomeribonuclease P6e-22102
NC_021150:5298500:532217753221775322569393Azotobacter vinelandii CA6, complete genomeribonuclease P2e-21101
NC_012560:5338707:536428553642855364677393Azotobacter vinelandii DJ, complete genomeBacterial ribonuclease P protein2e-21101
NC_002516:6255854:626380562638056264212408Pseudomonas aeruginosa PAO1, complete genomeribonuclease P3e-21100
NC_014315:3319865:332789633278963328255360Nitrosococcus watsoni C-113 chromosome, complete genomeribonuclease P protein component9e-1785.5
NC_019940:1:225225617393Thioflavicoccus mobilis 8321 chromosome, complete genomeribonuclease P protein component1e-1375.1
NC_008576:4701930:471869447186944719086393Magnetococcus sp. MC-1, complete genomeribonuclease P protein component2e-1271.2
NC_011979:4293859:430390743039074304266360Geobacter sp. FRC-32, complete genomeribonuclease P protein component5e-1063.2
NC_002488:2657274:267861926786192679047429Xylella fastidiosa 9a5c, complete genomeribonuclease P3e-0960.8
NC_009483:5113729:513563051356305135971342Geobacter uraniireducens Rf4 chromosome, complete genomeribonuclease P2e-0857.8
NC_010577:2513241:253489525348952535260366Xylella fastidiosa M23, complete genomeribonuclease P protein component5e-0856.6
NC_010513:2452811:247433324743332474698366Xylella fastidiosa M12 chromosome, complete genomeribonuclease P1e-0755.5
NC_009076:75535:103449103449103859411Burkholderia pseudomallei 1106a chromosome I, complete sequenceribonuclease P protein component7e-0752.8
NC_020299:764526:809325809325809723399Candidatus Kinetoplastibacterium oncopeltii TCC290E, completeribonuclease P protein component2e-0650.8
NC_015519:2739347:275913427591342759505372Tepidanaerobacter sp. Re1 chromosome, complete genomeRibonuclease P protein component5e-0649.7
NC_012856:3615550:364708936470893647511423Ralstonia pickettii 12D chromosome 1, complete genomeribonuclease P protein component8e-0649.3