Pre_GI: BLASTP Hits

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Query: NC_004337:309833:328428 Shigella flexneri 2a str. 301, complete genome

Start: 328428, End: 329600, Length: 1173

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004741:310382:3275723275723287441173Shigella flexneri 2a str. 2457T, complete genomehypothetical protein0759
NC_016830:1901488:1926872192687219280651194Pseudomonas fluorescens F113 chromosome, complete genomeacyltransferase 31e-53210
NC_009648:2699739:2729995272999527311161122Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeacyltransferase6e-39162
NC_016816:2925459:2931663293166329328261164Pantoea ananatis LMG 5342, complete genomeacyltransferase family protein2e-33143
NC_013508:1262333:1269987126998712711231137Edwardsiella tarda EIB202, complete genomehypothetical protein4e-2099.4
CP002185:2608000:2619683261968326208221140Escherichia coli W, complete genomehypothetical protein7e-1892
CP002516:1475521:1485035148503514861621128Escherichia coli KO11, complete genomeacyltransferase 36e-1892
NC_016902:1475521:1485035148503514861621128Escherichia coli KO11FL chromosome, complete genomeacyltransferase 36e-1892
NC_011740:621408:6269476269476280741128Escherichia fergusonii ATCC 35469, complete genomehypothetical protein7e-0858.9
NC_008228:1307943:1316024131602413171691146Pseudoalteromonas atlantica T6c, complete genomeacyltransferase 36e-0755.5
NC_015061:3840463:3875406387540638773701965Rahnella sp. Y9602 chromosome, complete genomeacyltransferase 37e-0755.5
NC_020209:997385:102757410275741028107534Pseudomonas poae RE*1-1-14, complete genomeacyltransferase 33e-0653.5
NC_020211:2985157:2993841299384129958051965Serratia marcescens WW4, complete genomeacyltransferase7e-0652