Pre_GI: BLASTP Hits

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Query: NC_004337:3049118:3083000 Shigella flexneri 2a str. 301, complete genome

Start: 3083000, End: 3083572, Length: 573

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:312270431227043123276573Shigella flexneri 2002017 chromosome, complete genomehypothetical protein1e-100364
NC_004741:3041294:307383030738303074402573Shigella flexneri 2a str. 2457T, complete genomehypothetical protein1e-100364
NC_011751:3453683:351015535101553510754600Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-98358
NC_004431:3409389:348706634870663487665600Escherichia coli CFT073, complete genomehypothetical protein1e-98358
NC_013716:5201097:523105052310505231649600Citrobacter rodentium ICC168, complete genomehypothetical protein5e-98356
NC_013592:446092:462187462187462762576Dickeya dadantii Ech586, complete genomehypothetical protein2e-28125
NC_008253:3161311:316278631627863163388603Escherichia coli 536, complete genomehypothetical protein2e-24112
NC_009708:915814:923029923029923625597Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein2e-24112
NC_013941:3676146:370804437080443708646603Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-24112
NC_014618:4114004:413407641340764134648573Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein4e-24110
NC_004431:279868:281863281863282471609Escherichia coli CFT073, complete genomehypothetical protein1e-23109
NC_013353:5272863:528213052821305282723594Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein5e-23107
AP010958:5272863:528213052821305282723594Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein5e-23107
NC_013421:1505176:150959415095941510127534Pectobacterium wasabiae WPP163, complete genomehypothetical protein4e-0961.2
NC_014618:4114004:413477241347724135305534Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein4e-0857.8
NC_013961:441719:463240463240463590351Erwinia amylovora, complete genomehypothetical protein7e-0650.4