Pre_GI: BLASTP Hits

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Query: NC_004337:3049118:3074521 Shigella flexneri 2a str. 301, complete genome

Start: 3074521, End: 3074772, Length: 252

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:311431231143123114563252Shigella flexneri 2002017 chromosome, complete genomehypothetical protein3e-41166
NC_017328:1075535:109358310935831093834252Shigella flexneri 2002017 chromosome, complete genomehypothetical protein3e-41166
NC_007941:11319:304403044030811372Escherichia coli UTI89 plasmid pUTI89, complete sequencehypothetical protein7e-41165
NC_007941:11319:158091580916204396Escherichia coli UTI89 plasmid pUTI89, complete sequencehypothetical protein9e-41165
NC_005815:61148:101236101236101631396Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completehypothetical protein1e-37154
NC_004838:51013:544085440854803396Yersinia pestis KIM plasmid pMT-1, complete sequencehypothetical protein1e-37154
NC_003134:64672:772197721977590372Yersinia pestis CO92 plasmid pMT1, complete sequencehypothetical protein2e-37154
NC_007414:56508:883428834288845504Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequencehypothetical protein4e-0753.5