Pre_GI: BLASTP Hits

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Query: NC_004129:926479:935147 Pseudomonas fluorescens Pf-5, complete genome

Start: 935147, End: 935521, Length: 375

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004129:926479:931900931900932529630Pseudomonas fluorescens Pf-5, complete genomeDNA-binding protein4e-64242
NC_008314:1275617:128201212820121282749738Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator2e-1064.3
NC_012667:1045782:106175010617501062373624Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein1e-0961.6
NC_003910:4234000:424542542454254246024600Colwellia psychrerythraea 34H, complete genomeDNA-binding protein3e-0960.8
NC_014966:795311:815631815631816254624Vibrio vulnificus MO6-24/O chromosome II, complete sequencetranscriptional regulator3e-0960.5
NC_015276:2769000:277194627719462772557612Marinomonas mediterranea MMB-1 chromosome, complete genomehelix-turn-helix domain protein8e-0959.3
NC_003910:2588000:260174326017432602339597Colwellia psychrerythraea 34H, complete genomeDNA-binding protein1e-0858.2
NC_007974:1607500:162676616267661627521756Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, XRE family with cupin sensor domain2e-0754.7