Pre_GI: BLASTP Hits

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Query: NC_004129:5846415:5867449 Pseudomonas fluorescens Pf-5, complete genome

Start: 5867449, End: 5868306, Length: 858

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009439:2038303:206188820618882062745858Pseudomonas mendocina ymp, complete genomedTDP-4-dehydrorhamnose reductase1e-114412
NC_007958:830000:838135838135839007873Rhodopseudomonas palustris BisB5, complete genomedTDP-4-dehydrorhamnose reductase2e-89328
NC_009659:2523874:252955725295572530411855Janthinobacterium sp. Marseille chromosome, complete genomedTDP-4-dehydrorhamnose reductase3e-88325
NC_007940:782207:788798788798789652855Rickettsia bellii RML369-C, complete genomedTDP-4-dehydrorhamnose reductase3e-88324
NC_014394:3036758:304488330448833045737855Gallionella capsiferriformans ES-2 chromosome, complete genomedTDP-4-dehydrorhamnose reductase2e-86318
NC_009883:871594:877185877185878039855Rickettsia bellii OSU 85-389, complete genomedTDP-4-dehydrorhamnose reductase3e-86318
NC_009138:1138917:116449311644931165347855Herminiimonas arsenicoxydans, complete genomeputative dTDP-4-dehydrorhamnose reductase2e-81301
NC_011979:1590432:161003616100361610920885Geobacter sp. FRC-32, complete genomedTDP-4-dehydrorhamnose reductase2e-73276
NC_014965:2954876:297051129705112971383873Vibrio vulnificus MO6-24/O chromosome I, complete sequencedTDP-4-dehydrorhamnose reductase8e-72270
NC_002939:2454686:246209224620922463006915Geobacter sulfurreducens PCA, complete genomecarbohydrate oxidoreductase, putative6e-72270
NC_010067:807129:818566818566819441876Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein9e-68256
NC_014323:4792048:482512448251244825981858Herbaspirillum seropedicae SmR1 chromosome, complete genomedTDP-4-dehydrorhamnose reductase3e-67255
NC_010506:2046000:205878920587892059661873Shewanella woodyi ATCC 51908, complete genomedTDP-4-dehydrorhamnose reductase2e-63242
NC_011979:2352961:236928123692812370126846Geobacter sp. FRC-32, complete genomedTDP-4-dehydrorhamnose reductase2e-61236
NC_015500:2112975:212246021224602123341882Treponema brennaborense DSM 12168 chromosome, complete genomeNAD-dependent epimerase/dehydratase3e-35148
NC_006347:2154906:217312421731242173987864Bacteroides fragilis YCH46, complete genomeputative reductase8e-34144
NC_013410:3280039:331926733192673320121855Fibrobacter succinogenes subsp. succinogenes S85 chromosome,dTDP-4-dehydrorhamnose reductase3e-33142
NC_009615:644757:671332671332672180849Parabacteroides distasonis ATCC 8503 chromosome, complete genomereductase3e-31135
NC_014622:4517709:452229445222944523148855Paenibacillus polymyxa SC2 chromosome, complete genomenad dependent epimerase/dehydratase4e-31135
NC_010003:1360472:137497613749761375788813Petrotoga mobilis SJ95, complete genomedTDP-4-dehydrorhamnose reductase3e-30132
NC_014624:2478985:248987424898742490734861Eubacterium limosum KIST612 chromosome, complete genomeputative reductase1e-21103
NC_016609:8271000:828823982882398289042804Niastella koreensis GR20-10 chromosome, complete genomedTDP-4-dehydrorhamnose reductase7e-1787.8
NC_016816:1912366:194165119416511942499849Pantoea ananatis LMG 5342, complete genomedTDP-4-dehydrorhamnose reductase1e-1170.5
NC_003901:1386000:138709613870961387905810Methanosarcina mazei Go1, complete genomedTDP-4-dehydrorhamnose reductase1e-1067.4
NC_014735:199434:204200204200205105906Halogeometricum borinquense DSM 11551 plasmid pHBOR01, completedTDP-4-dehydrorhamnose reductase3e-1066.2
NC_014098:850000:856037856037856897861Bacillus tusciae DSM 2912 chromosome, complete genomedTDP-4-dehydrorhamnose reductase2e-1066.2
NC_013956:2523955:252801225280122528947936Pantoea ananatis LMG 20103 chromosome, complete genomeRfbD3e-1065.9
NC_005139:305420:311372311372312253882Vibrio vulnificus YJ016 chromosome I, complete sequencedTDP-4-dehydrorhamnose reductase4e-1065.9
NC_012883:1817358:183179918317991832662864Thermococcus sibiricus MM 739, complete genomedTDP 4-dehydrorhamnose reductase6e-1065.1
NC_008609:2254392:225529922552992256141843Pelobacter propionicus DSM 2379, complete genomedTDP-4-dehydrorhamnose reductase8e-1064.3
NC_015565:2736500:275306227530622753919858Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completedTDP-4-dehydrorhamnose reductase1e-0964.3
NC_014374:669356:669356669356670207852Acidilobus saccharovorans 345-15 chromosome, complete genomeDTDP-4-dehydrorhamnose reductase1e-0963.5
NC_016051:1429800:143903514390351439898864Thermococcus sp. AM4 chromosome, complete genomedTDP-4-dehydrorhamnose reductase2e-0962.8
NC_018876:2305659:232230323223032323088786Methanolobus psychrophilus R15 chromosome, complete genomedTDP-4-dehydrorhamnose reductase5e-0962
NC_016641:834500:838912838912839787876Paenibacillus terrae HPL-003 chromosome, complete genomespore coat polysaccharide biosynthesis protein spsK9e-0960.8
NC_015955:581685:598290598290599180891Halophilic archaeon DL31 plasmid phalar01, complete sequencedTDP-4-dehydrorhamnose reductase2e-0860.1
NC_003552:2674385:269175426917542692488735Methanosarcina acetivorans C2A, complete genome2e-0860.1
NC_013202:1144192:115850411585041159394891Halomicrobium mukohataei DSM 12286, complete genomedTDP-4-dehydrorhamnose reductase2e-0860.1
NC_000961:372000:379302379302380174873Pyrococcus horikoshii OT3, complete genomedTDP-4-dehydrorhamnose reductase2e-0860.1
NC_011529:1722829:173005117300511730917867Thermococcus onnurineus NA1, complete genomehypothetical dTDP-4-dehydrorhamnose reductase2e-0860.1
NC_009052:3381943:339981833998183400693876Shewanella baltica OS155, complete genomedTDP-4-dehydrorhamnose reductase3e-0859.3
NC_014804:1856388:186479018647901865641852Thermococcus barophilus MP chromosome, complete genomedTDP-4-dehydrorhamnose reductase5e-0858.5
NC_007760:4911181:493220549322054933101897Anaeromyxobacter dehalogenans 2CP-C, complete genomedTDP-4-dehydrorhamnose reductase9e-0857.8
NC_013406:6494079:650231465023146503192879Paenibacillus sp. Y412MC10 chromosome, complete genomedTDP-4-dehydrorhamnose reductase1e-0757.4
NC_009464:2523092:255059925505992551393795Uncultured methanogenic archaeon RC-I, complete genomedTDP-4-dehydrorhamnose reductase2e-0757
NC_010483:273080:289168289168290019852Thermotoga sp. RQ2, complete genomedTDP-4-dehydrorhamnose reductase2e-0756.6
NC_015566:1659288:169931416993141700180867Serratia sp. AS12 chromosome, complete genomedTDP-4-dehydrorhamnose reductase2e-0756.6
NC_015567:1660462:169932616993261700192867Serratia sp. AS9 chromosome, complete genomedTDP-4-dehydrorhamnose reductase2e-0756.6
NC_019897:4131337:413535641353564136219864Thermobacillus composti KWC4 chromosome, complete genomedTDP-4-dehydrorhamnose reductase2e-0756.6
NC_014205:842314:870571870571871425855Staphylothermus hellenicus DSM 12710 chromosome, complete genomedTDP-4-dehydrorhamnose reductase3e-0755.8
NC_009655:866281:890928890928891803876Actinobacillus succinogenes 130Z chromosome, complete genomedTDP-4-dehydrorhamnose reductase3e-0755.8
NC_007951:740500:743057743057743974918Burkholderia xenovorans LB400 chromosome 1, complete sequencedTDP-4-dehydrorhamnose reductase5e-0755.5
NC_000868:1130944:113742011374201138271852Pyrococcus abyssi GE5, complete genomedtdp-4-dehydrorhamnose reductase5e-0755.5
NC_010334:722408:736706736706737641936Shewanella halifaxensis HAW-EB4, complete genomedTDP-4-dehydrorhamnose reductase5e-0755.1
NC_000854:723000:730716730716731618903Aeropyrum pernix K1, complete genomedTDP-4-dehydrorhamnose reductase6e-0755.1
NC_007513:75197:846908469085556867Synechococcus sp. CC9902, complete genomedTDP-4-dehydrorhamnose reductase-like6e-0754.7
NC_013769:961072:968235968235969059825Sulfolobus islandicus L.D.8.5 chromosome, complete genomedTDP-4-dehydrorhamnose reductase7e-0754.7
NC_010424:1778459:177948417794841780341858Candidatus Desulforudis audaxviator MP104C, complete genomedTDP-4-dehydrorhamnose reductase1e-0653.9
NC_010682:661272:676965676965677885921Ralstonia pickettii 12J chromosome 1, complete sequencedTDP-4-dehydrorhamnose reductase2e-0653.5
NC_013158:2170083:219012221901222191015894Halorhabdus utahensis DSM 12940, complete genomedTDP-4-dehydrorhamnose reductase2e-0653.1
NC_015680:1562535:158234715823471583204858Pyrococcus yayanosii CH1 chromosome, complete genomedTDP-4-dehydrorhamnose reductase2e-0652.8
NC_017030:6061070:608696360869636087862900Corallococcus coralloides DSM 2259 chromosome, complete genomedTDP-4-dehydrorhamnose reductase3e-0652.8
NC_015320:470988:473243473243474112870Archaeoglobus veneficus SNP6 chromosome, complete genomedTDP-4-dehydrorhamnose reductase4e-0652.4
NC_014311:2781898:279625127962512797168918Ralstonia solanacearum PSI07 chromosome, complete genomeTDP-rhamnose synthetase, NAD(P)-binding7e-0651.2
NC_008781:3688965:370391937039193704809891Polaromonas naphthalenivorans CJ2, complete genomedTDP-4-dehydrorhamnose reductase8e-0651.2
NC_010482:841609:853663853663854571909Candidatus Korarchaeum cryptofilum OPF8, complete genomedTDP-4-dehydrorhamnose reductase9e-0651.2