Pre_GI: BLASTP Hits

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Query: NC_004129:4993974:5001116 Pseudomonas fluorescens Pf-5, complete genome

Start: 5001116, End: 5001445, Length: 330

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012660:1804610:183339718333971833747351Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein3e-22103
NC_020209:997385:102935310293531029685333Pseudomonas poae RE*1-1-14, complete genomehypothetical protein3e-21100
NC_007492:4563981:456685345668534567188336Pseudomonas fluorescens PfO-1, complete genomeCompetence protein ComEA helix-hairpin-helix region3e-21100
NC_009512:4375452:437890843789084379243336Pseudomonas putida F1, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein7e-1785.9
NC_017986:1128879:113550411355041135854351Pseudomonas putida ND6 chromosome, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein1e-1478.2
NC_009656:1994392:202881820288182029141324Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein1e-0962
NC_013416:1429881:143003814300381430367330Aggregatibacter actinomycetemcomitans D11S-1, complete genomeComE operon protein 13e-0960.5
NC_002516:3519000:352416135241613524490330Pseudomonas aeruginosa PAO1, complete genomehypothetical protein1e-0858.9
NC_014541:1231021:123408112340811234365285Ferrimonas balearica DSM 9799 chromosome, complete genomecompetence protein ComEA helix-hairpin-helix repeat protein2e-0754.3
NC_007645:2408125:243129424312942431599306Hahella chejuensis KCTC 2396, complete genomeDNA uptake protein and related DNA-binding protein4e-0650.1