Pre_GI: BLASTP Hits

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Query: NC_004129:4596040:4597304 Pseudomonas fluorescens Pf-5, complete genome

Start: 4597304, End: 4598182, Length: 879

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018080:6048516:608088560808856081700816Pseudomonas aeruginosa DK2 chromosome, complete genomefatty acid hydroxylase5e-37154
NC_010162:2469915:249091824909182491817900Sorangium cellulosum 'So ce 56', complete genomehypothetical protein2e-29129
NC_010162:3177324:318202431820243182932909Sorangium cellulosum 'So ce 56', complete genomehypothetical protein2e-25116
NC_007511:3371319:3371319337131933723381020Burkholderia sp. 383 chromosome 2, complete sequenceSterol desaturase-like7e-1064.7
NC_019940:929071:933337933337934113777Thioflavicoccus mobilis 8321 chromosome, complete genomesterol desaturase3e-0962.8
NC_011001:163813:186525186525187442918Burkholderia cenocepacia J2315 chromosome 2, complete sequencehypothetical protein4e-0962
NC_016514:2647984:2672911267291126740951185Enterobacter cloacae EcWSU1 chromosome, complete genomeC-5 sterol desaturase5e-0962
NC_010002:2518599:2524226252422625253501125Delftia acidovorans SPH-1, complete genomefatty acid hydroxylase2e-0860.1
NC_015563:4911188:4925672492567249267961125Delftia sp. Cs1-4 chromosome, complete genomefatty acid hydroxylase3e-0859.3
NC_016112:2903767:291457029145702915568999Methylomicrobium alcaliphilum chromosome, complete genomeFatty acid hydroxylase5e-0858.5
NC_008596:2873675:287456428745642875436873Mycobacterium smegmatis str. MC2 155, complete genomeC-5 sterol desaturase8e-0858.2
NC_015186:2197236:226819622681962269035840Acidiphilium multivorum AIU301, complete genomehypothetical protein2e-0757
NC_008343:1548020:155393615539361554880945Granulibacter bethesdensis CGDNIH1, complete genomesterol desaturase family protein4e-0755.5
NC_012917:4646491:4666541466654146676651125Pectobacterium carotovorum subsp. carotovorum PC1, complete genomefatty acid hydroxylase4e-0755.5
NC_018080:3088866:311163231116323112111480Pseudomonas aeruginosa DK2 chromosome, complete genomesterol desaturase-like protein3e-0652.8
NC_014623:8798820:8800099880009988011991101Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesterol desaturase family protein4e-0652.4
NC_013222:2595315:261464026146402615602963Robiginitalea biformata HTCC2501, complete genomehypothetical protein5e-0652
NC_012721:2406874:241461124146112415411801Burkholderia glumae BGR1 chromosome 2, complete genomeSterol desaturase5e-0652
NC_014931:4490526:449052644905264491473948Variovorax paradoxus EPS chromosome, complete genomefatty acid hydroxylase8e-0651.2