Pre_GI: BLASTP Hits

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Query: NC_004129:2201780:2212674 Pseudomonas fluorescens Pf-5, complete genome

Start: 2212674, End: 2212958, Length: 285

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:5031819:504487050448705045154285Pseudomonas fluorescens F113 chromosome, complete genomeDNA-binding protein Roi-related protein4e-43172
NC_004578:3849835:386051338605133860797285Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein1e-34145
NC_017986:5509569:552215955221595522449291Pseudomonas putida ND6 chromosome, complete genomeDNA-binding protein Roi-related protein8e-29125
NC_002947:3404000:341856734185673418857291Pseudomonas putida KT2440, complete genomeDNA-binding protein Roi-related protein2e-28124