Pre_GI: BLASTP Hits

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Query: NC_004129:2201780:2212189 Pseudomonas fluorescens Pf-5, complete genome

Start: 2212189, End: 2212515, Length: 327

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:5031819:504531350453135045642330Pseudomonas fluorescens F113 chromosome, complete genometranscriptional regulator9e-49191
NC_004578:3849835:386130938613093861632324Pseudomonas syringae pv. tomato str. DC3000, complete genometranscriptional regulator, putative3e-41167
NC_017986:5509569:552168355216835522000318Pseudomonas putida ND6 chromosome, complete genomepyocin R2 PP, transcriptional activator prtN1e-35148
NC_002947:3404000:341809134180913418408318Pseudomonas putida KT2440, complete genomepyocin R2_PP, transcriptional activator prtN6e-35145