Pre_GI: BLASTP Hits

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Query: NC_004129:2201780:2209446 Pseudomonas fluorescens Pf-5, complete genome

Start: 2209446, End: 2211179, Length: 1734

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010322:1336231:1343643134364313453221680Pseudomonas putida GB-1 chromosome, complete genomeC-5 cytosine-specific DNA methylase0714
NC_011894:3029964:3029964302996430320422079Methylobacterium nodulans ORS 2060, complete genomeC-5 cytosine-specific DNA methylase6e-120431
NC_010508:1705500:171459317145931714919327Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence6e-21102
NC_008542:1727000:173607717360771736400324Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceC-5 cytosine-specific DNA methylase2e-20101
NC_008060:1182378:119139211913921191715324Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceC-5 cytosine-specific DNA methylase2e-20101
NC_017249:8510121:8517199851719985182991101Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-0758.2
NC_016585:417979:4293494293494304551107Azospirillum lipoferum 4B plasmid AZO_p1, complete sequenceCytosine-specific methyltransferase HgiDII2e-0654.3