Pre_GI: BLASTP Hits

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Query: NC_004129:1014986:1034464 Pseudomonas fluorescens Pf-5, complete genome

Start: 1034464, End: 1035504, Length: 1041

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013771:1171251:1172204117220411732981095Cyanobacterium UCYN-A, complete genomeK+dependent Na+ exchanger related-protein6e-50198
NC_014364:4416467:4417386441738644185251140Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeNa+/Ca+ antiporter, CaCA family4e-43175
NC_017080:2893224:2916989291698929180771089Phycisphaera mikurensis NBRC 102666, complete genomeputative transporter2e-40166
NC_020302:2219378:2226147222614722272801134Corynebacterium halotolerans YIM 70093 = DSM 44683, completehypothetical protein4e-39162
NC_015387:155728:169000169000169935936Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeNa+/Ca+ antiporter, CaCA family2e-37156
NC_007577:503440:5303715303715314501080Prochlorococcus marinus str. MIT 9312, complete genomeK+-dependent Na+/Ca+ exchanger related-protein4e-31135
NC_014933:1081844:108308610830861084048963Bacteroides helcogenes P 36-108 chromosome, complete genomeNa+/Ca+ antiporter, CaCA family3e-30132
NC_008816:518895:5458175458175468961080Prochlorococcus marinus str. AS9601, complete genomeputative CaCA family sodium/calcium exchanger8e-30131
NC_004663:3801071:381821838182183819204987Bacteroides thetaiotaomicron VPI-5482, complete genomeputative Na+/Ca2+ exchanger protein, cation antiporter6e-30131
NC_009718:799431:804109804109805053945Fervidobacterium nodosum Rt17-B1, complete genomeCaCA family Na(+)/Ca(+) antiporter4e-29129
NC_014844:1818939:184015218401521841120969Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeCACA family Na+/Ca+ antiporter7e-28124
NC_016112:562570:583820583820584791972Methylomicrobium alcaliphilum chromosome, complete genomeInner membrane protein yrbG4e-27122
NC_008262:1721496:172219517221951723190996Clostridium perfringens SM101, complete genomeK+-dependent Na+/Ca+ exchanger related-protein7e-25115
NC_014507:374359:399433399433400359927Methanoplanus petrolearius DSM 11571 chromosome, complete genomeCaCA family Na+/Ca+ antiporter2e-22107
NC_015638:328601:328601328601329539939Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeNa+/Ca+ antiporter, CaCA family2e-22106
NC_013642:505518:521199521199522128930Thermotoga naphthophila RKU-10, complete genomeNa+/Ca+ antiporter, CaCA family7e-22105
NC_009465:813816:815220815220816173954Candidatus Vesicomyosocius okutanii HA, complete genomeCa2+:Na+ antiporter1e-1997.8
NC_011978:1812000:181673918167391817671933Thermotoga neapolitana DSM 4359, complete genomeNa+/Ca+ antiporter, CaCA family precursor1e-1997.4
NC_000868:1502276:151909115190911520035945Pyrococcus abyssi GE5, complete genomena+/ca+ exchanging protein related2e-1790.1
NC_015474:1035834:103692110369211037868948Pyrococcus sp. NA2 chromosome, complete genomeNa(+)/Ca(2+)-exchanging protein1e-1687.8
NC_015680:1315040:134520213452021346125924Pyrococcus yayanosii CH1 chromosome, complete genomeNa(+)/Ca(2+)-exchanging protein1e-1687.4
NC_014002:1129349:114680111468011147757957Methanohalophilus mahii DSM 5219 chromosome, complete genomeNa+/Ca+ antiporter, CaCA family5e-1685.5
NC_017095:269165:286469286469287422954Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeK+dependent Na+ exchanger related-protein5e-1685.5
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome1e-1480.9
NC_014935:1511835:152772215277221528666945Nitratifractor saLSUginis DSM 16511 chromosome, complete genomena+/ca+ antiporter, caca family1e-1480.9
NC_016048:3947663:396618239661823967168987Oscillibacter valericigenes Sjm18-20, complete genomeputative transporter4e-1479.3
NC_009975:688667:690149690149691111963Methanococcus maripaludis C6, complete genomeNa+/Ca+ antiporter, CaCA family4e-1479
NC_008260:2961291:297513829751382976121984Alcanivorax borkumensis SK2, complete genomeCa2+/Na+antiporter protein8e-1478.2
NC_004193:375416:469496469496470452957Oceanobacillus iheyensis HTE831, complete genomehypothetical protein2e-1377
NC_013926:71186:9546595465964691005Aciduliprofundum boonei T469 chromosome, complete genomeNa+/Ca+ antiporter, CaCA family6e-1375.1
NC_014414:2467639:246665924666592467642984Parvularcula bermudensis HTCC2503 chromosome, complete genomeK+-dependent Na+/Ca+ exchanger related-protein1e-1067.8
NC_000918:35564:427954279543763969Aquifex aeolicus VF5, complete genomehypothetical protein9e-1064.7
NC_011899:2165814:2169737216973721708071071Halothermothrix orenii H 168, complete genomeNa+/Ca+ antiporter, CaCA family1e-0758.2
NC_014729:703000:7245257245257255621038Halogeometricum borinquense DSM 11551 chromosome, complete genomeca2+/na+ antiporter2e-0653.5