Pre_GI: BLASTP Hits

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Query: NC_003888:6470909:6490462 Streptomyces coelicolor A3(2), complete genome

Start: 6490462, End: 6491442, Length: 981

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009380:4702815:470380447038044704718915Salinispora tropica CNB-440 chromosome, complete genomeshort chain dehydrogenase3e-86318
NC_009380:2310000:2318023231802323196751653Salinispora tropica CNB-440 chromosome, complete genomeglucose/ribitol dehydrogenase2e-77289
NC_013595:3712257:371225737122573713153897Streptosporangium roseum DSM 43021, complete genomeshort chain dehydrogenase2e-75282
NC_013946:305364:306403306403307317915Meiothermus ruber DSM 1279 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR2e-67256
NC_010162:5129270:513242951324295133382954Sorangium cellulosum 'So ce 56', complete genomeshort chain dehydrogenase7e-62237
NC_012808:3972983:398553739855373986355819Methylobacterium extorquens AM1, complete genomeputative short-chain dehydrogenase/reductase SDR7e-28124
NC_007511:1681764:169728416972841698150867Burkholderia sp. 383 chromosome 2, complete sequenceShort-chain dehydrogenase/reductase SDR5e-23108
NC_016947:70210:905649056491409846Mycobacterium intracellulare MOTT-02 chromosome, complete genomeshort-chain dehydrogenase/reductase SDR4e-22105