Pre_GI: BLASTP Hits

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Query: NC_003888:5790104:5807420 Streptomyces coelicolor A3(2), complete genome

Start: 5807420, End: 5808325, Length: 906

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014151:1373937:137757313775731378442870Cellulomonas flavigena DSM 20109 chromosome, complete genomeSRA-YDG domain protein9e-68257
NC_016628:133841:150600150600151496897Vibrio furnissii NCTC 11218 chromosome 2, complete sequencehypothetical protein1e-61236
NC_009953:1799416:180957418095741810446873Salinispora arenicola CNS-205 chromosome, complete genomeSRA-YDG domain-containing protein7e-60231
NC_003155:4592000:4634597463459746361441548Streptomyces avermitilis MA-4680, complete genomehypothetical protein7e-30131
NC_016109:1:2892289244721581Kitasatospora setae KM-6054, complete genomehypothetical protein9e-27120
NC_016109:8761557:8778807877880787803871581Kitasatospora setae KM-6054, complete genomehypothetical protein9e-27120
NC_003155:6295078:630905063090506309583534Streptomyces avermitilis MA-4680, complete genomehypothetical protein3e-24112
NC_014391:1317957:1338741133874113402311491Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeHNH nuclease2e-21103
NC_019673:2155669:2174364217436421756891326Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein6e-2098.2
NC_019792:2524130:2578703257870325799441242Natronobacterium gregoryi SP2 chromosome, complete genomeHNH endonuclease6e-1478.2