Pre_GI: BLASTP Hits

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Query: NC_003888:4927170:4957723 Streptomyces coelicolor A3(2), complete genome

Start: 4957723, End: 4959303, Length: 1581

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003888:5114147:5121109512110951229231815Streptomyces coelicolor A3(2), complete genomeintegral membrane protein1e-72274
NC_015656:2565417:2565417256541725672491833Frankia symbiont of Datisca glomerata chromosome, complete genomehypothetical protein9e-38158
NC_013131:8029621:8039050803905080435374488Catenulispora acidiphila DSM 44928, complete genomeYD repeat protein4e-24113
NC_013131:9976929:99960419996041100006274587Catenulispora acidiphila DSM 44928, complete genomeYD repeat protein5e-23109
NC_003888:4927170:4952253495225349536771425Streptomyces coelicolor A3(2), complete genomehypothetical protein5e-1479.7
NC_015656:3653440:3669708366970836743544647Frankia symbiont of Datisca glomerata chromosome, complete genomeRHS repeat-associated core domain-containing protein1e-1378.6
NC_013440:3112340:3112340311234031214509111Haliangium ochraceum DSM 14365, complete genomehypothetical protein6e-0756.2
NC_016111:4645145:4656715465671546580611347Streptomyces cattleya NRRL 8057, complete genomehypothetical protein1e-0655.5
NC_003888:4927170:4936959493695949381641206Streptomyces coelicolor A3(2), complete genomehypothetical protein4e-0653.5