Pre_GI: BLASTP Hits

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Query: NC_003888:3602753:3624449 Streptomyces coelicolor A3(2), complete genome

Start: 3624449, End: 3624859, Length: 411

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017955:1584269:159445615944561594863408Modestobacter marinus, complete genomehypothetical protein8e-40162
NC_015671:3093596:310819531081953108596402Cellvibrio gilvus ATCC 13127 chromosome, complete genomehypothetical protein6e-36149
NC_013757:1438812:144179114417911442198408Geodermatophilus obscurus DSM 43160, complete genomeprotein of unknown function DUF3262e-35147
NC_014151:370882:387626387626388027402Cellulomonas flavigena DSM 20109 chromosome, complete genomeprotein of unknown function DUF3265e-35145
NC_008541:1931266:193766919376691938088420Arthrobacter sp. FB24 chromosome 1, complete sequenceprotein of unknown function DUF3262e-34144
NC_012803:1980955:199173019917301992140411Micrococcus luteus NCTC 2665, complete genomeprotein of unknown function (DUF326)2e-33140
NC_010682:1913941:193367719336771934003327Ralstonia pickettii 12J chromosome 1, complete sequenceprotein of unknown function DUF3261e-1065.1
NC_020829:940692:965104965104965433330Pseudomonas denitrificans ATCC 13867, complete genomeferredoxin4e-1063.5
NC_015761:1181186:122259512225951222921327Salmonella bongori NCTC 12419, complete genomehypothetical protein7e-1062.8
NC_016810:1276340:130217013021701302496327Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-0960.5
NC_016857:1276340:130217013021701302496327Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein3e-0960.5
NC_017046:1277787:130224313022431302569327Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein3e-0960.5
NC_006905:1342474:137694113769411377267327Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein5e-0959.7
NC_003197:1320861:134531713453171345643327Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein5e-0959.7
NC_016831:1083871:110832111083211108647327Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein5e-0959.7
NC_016856:1326503:135529213552921355618327Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein5e-0959.7
NC_016860:1317174:134300313430031343329327Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein5e-0959.7
NC_016863:1277652:130348213034821303808327Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein5e-0959.7
NC_004631:1182883:121248412124841212810327Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein7e-0959.3
NC_011094:1282385:131198213119821312308327Salmonella enterica subsp. enterica serovar Schwarzengrund strferredoxin1e-0858.5
NC_014831:1906691:191464519146451914989345Thermaerobacter marianensis DSM 12885 chromosome, complete genomeferredoxin3e-0857
NC_007645:2842957:284577328457732846102330Hahella chejuensis KCTC 2396, complete genomeFerredoxin6e-0856.2
NC_016048:1694631:170695717069571707301345Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein2e-0651.6