Pre_GI: BLASTP Hits

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Query: NC_003888:3138905:3160574 Streptomyces coelicolor A3(2), complete genome

Start: 3160574, End: 3161326, Length: 753

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014666:7152782:715422171542217154967747Frankia sp. EuI1c chromosome, complete genomehypothetical protein5e-65247
NC_009633:3055413:309370030937003094437738Alkaliphilus metalliredigens QYMF chromosome, complete genomebeta-lactamase domain-containing protein5e-33141
NC_007530:1068000:106941010694101070144735Bacillus anthracis str. 'Ames Ancestor', complete genomehypothetical protein2e-32139
NC_003997:1068000:106941010694101070144735Bacillus anthracis str. Ames, complete genomehypothetical protein2e-32139
NC_010545:1691999:171272617127261713520795Corynebacterium urealyticum DSM 7109, complete genomehypothetical protein1e-29129
NC_014831:388007:413226413226413969744Thermaerobacter marianensis DSM 12885 chromosome, complete genomebeta-lactamase domain-containing protein2e-27122
NC_008525:1202852:120774412077441208481738Pediococcus pentosaceus ATCC 25745, complete genomeMetal-dependent hydrolase of the beta-lactamase superfamily III4e-24111
NC_015978:996933:100201310020131002756744Lactobacillus sanfranciscensis TMW 1.1304 chromosome, completehypothetical protein2e-22106
NC_016641:4653889:466183846618384662608771Paenibacillus terrae HPL-003 chromosome, complete genomebeta-lactamase3e-22105
NC_015428:700479:713818713818714558741Lactobacillus buchneri NRRL B-30929 chromosome, complete genomebeta-lactamase domain-containing protein1e-20100
NC_016605:766836:781697781697782437741Pediococcus claussenii ATCC BAA-344 chromosome, complete genomemetallo-beta-lactamase family protein3e-2098.6
NC_010424:1563033:158937115893711590132762Candidatus Desulforudis audaxviator MP104C, complete genomebeta-lactamase domain protein1e-1893.6
NC_014720:1737574:174131517413151742037723Caldicellulosiruptor kronotskyensis 2002 chromosome, completebeta-lactamase domain protein4e-1891.7
NC_008497:1111891:113905411390541139794741Lactobacillus brevis ATCC 367, complete genomeMetal-dependent hydrolase of the beta-lactamase superfamily III5e-1891.3
NC_011894:6220791:623168162316816232412732Methylobacterium nodulans ORS 2060, complete genomebeta-lactamase domain protein2e-1273.2
NC_010718:464405:464405464405465184780Natranaerobius thermophilus JW/NM-WN-LF, complete genomebeta-lactamase domain protein4e-1271.6
NC_018876:168207:206512206512207288777Methanolobus psychrophilus R15 chromosome, complete genomebeta-lactamase-like protein7e-1271.2
NC_011027:1570955:158634615863461587092747Chlorobaculum parvum NCIB 8327, complete genomeseceted metal-dependent hydrolase of the beta-lactamase superfamily III2e-1169.7
NC_000917:829159:839164839164840084921Archaeoglobus fulgidus DSM 4304, complete genomeribonuclease Z1e-1067
NC_011894:3319856:334064733406473341618972Methylobacterium nodulans ORS 2060, complete genomebeta-lactamase domain protein2e-1065.9
NC_014738:55782:742857428575199915Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,rnase z2e-1065.9
NC_014002:1061501:106400610640061064767762Methanohalophilus mahii DSM 5219 chromosome, complete genomebeta-lactamase domain protein3e-1065.9
NC_010525:1360871:136279713627971363504708Thermoproteus neutrophilus V24Sta, complete genomebeta-lactamase domain protein2e-0963.2
NC_016646:275818:279007279007279741735Pseudovibrio sp. FO-BEG1 plasmid unnamed, complete sequenceMetal-dependent Hydrolase of the beta-lactamase superfamily III2e-0963.2
NC_018876:2628966:268405826840582684975918Methanolobus psychrophilus R15 chromosome, complete genomeribonuclease Z3e-0962.4
NC_015416:2692536:270730127073012708218918Methanosaeta concilii GP-6 chromosome, complete genomeribonuclease Z9e-0960.8
NC_007645:829500:834168834168834923756Hahella chejuensis KCTC 2396, complete genomeMetal-dependent Hydrolase of the beta-lactamase superfamily III5e-0858.2
NC_015428:823420:823420823420824358939Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeribonuclease Z8e-0857.4
NC_010814:2074266:208813020881302088918789Geobacter lovleyi SZ, complete genomebeta-lactamase domain protein1e-0757
NC_010382:3350816:335258633525863353527942Lysinibacillus sphaericus C3-41, complete genomeribonuclease Z4e-0755.5
NC_013959:826868:866300866300867064765Sideroxydans lithotrophicus ES-1 chromosome, complete genomebeta-lactamase domain protein3e-0652.4
NC_018870:115982:125766125766126554789Thermacetogenium phaeum DSM 12270 chromosome, complete genomebeta-lactamase-like protein5e-0651.6