Pre_GI: BLASTP Hits

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Query: NC_003888:2814360:2849992 Streptomyces coelicolor A3(2), complete genome

Start: 2849992, End: 2850486, Length: 495

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:6663889:666859066685906669315726Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-41169
NC_021177:2451000:246559024655902466081492Streptomyces fulvissimus DSM 40593, complete genomeMetal-dependent phosphohydrolase HD region2e-39161
NC_016114:4922630:492657549265754927075501Streptomyces flavogriseus ATCC 33331 chromosome, complete genomemetal-dependent phosphohydrolase8e-37152
NC_010408:79855:801478014780671525Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1,hypothetical protein2e-1581.6
NC_014643:2056280:211478521147852115267483Rothia dentocariosa ATCC 17931 chromosome, complete genomeguanosine-3,5-bis(diphosphate) 3-diphosphatase6e-1476.6
NC_012466:1754388:176362917636291764042414Streptococcus pneumoniae JJA, complete genomemetal dependent phosphohydrolase, HD region1e-0962.4
NC_014498:1983740:200907520090752009488414Streptococcus pneumoniae 670-6B chromosome, complete genomemetal dependent phosphohydrolase, HD region1e-0962.4
NC_012471:1752483:176255217625521762971420Streptococcus equi subsp. equi 4047, complete genomephage protein2e-0961.6
NC_015737:1441086:145181214518121452240429Clostridium sp. SY8519, complete genomeguanosine polyphosphate pyrophosphohydrolase/synthetases6e-0960.1
NC_014833:2855543:287596528759652876396432Ruminococcus albus 7 chromosome, complete genomemetal dependent phosphohydrolase1e-0858.9
NC_013665:1591081:159435515943551594792438Methanocella paludicola SANAE, complete genomehypothetical protein1e-0755.8
NC_012491:4231469:424542842454284245850423Brevibacillus brevis NBRC 100599, complete genomehypothetical protein2e-0755.1
NC_008576:2011959:201195920119592012420462Magnetococcus sp. MC-1, complete genomehypothetical protein3e-0754.3