Pre_GI: BLASTP Hits

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Query: NC_003366:255480:267399 Clostridium perfringens str. 13, complete genome

Start: 267399, End: 268028, Length: 630

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008261:225425:236809236809237438630Clostridium perfringens ATCC 13124, complete genomehypothetical protein2e-86318
NC_008262:227354:238759238759239388630Clostridium perfringens SM101, complete genometransferase, putative2e-84311
NC_014098:850000:875615875615876289675Bacillus tusciae DSM 2912 chromosome, complete genomesugar O-acyltransferase, sialic acid O- acetyltransferase NeuD family6e-1373.9
NC_016148:1877711:188324718832471883894648Thermovirga lienii DSM 17291 chromosome, complete genomesugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family4e-1271.2
NC_019892:3030737:304382330438233044509687Singulisphaera acidiphila DSM 18658 chromosome, complete genomesugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family2e-1065.5
NC_019968:891904:904522904522905166645Prevotella dentalis DSM 3688 chromosome 2, complete sequencehypothetical protein6e-1064.3
NC_014387:497883:549537549537550172636Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeacetyltransferase2e-0962.4
NC_014206:3468500:347082834708283471460633Geobacillus sp. C56-T3 chromosome, complete genomesugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family9e-0960.1
NC_016593:3402205:341881234188123419444633Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completesugar O-acyltransferase, sialic acid O-acetyltransferase NeuD3e-0858.5
NC_014974:246404:259975259975260607633Thermus scotoductus SA-01 chromosome, complete genomeacetyltransferase with multiple hexapeptide repeat domains6e-0857.4
NC_014973:1767798:176952217695221770160639Geobacter sp. M18 chromosome, complete genomesugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family1e-0756.6
NC_014622:2477019:248231924823192482960642Paenibacillus polymyxa SC2 chromosome, complete genomeacetyltransferase9e-0753.5
NC_014011:1760793:176745317674531768064612Aminobacterium colombiense DSM 12261 chromosome, complete genomesugar O-acyltransferase, sialic acid O- acetyltransferase NeuD family2e-0652.8
NC_013456:145171:152237152237152875639Vibrio sp. Ex25 chromosome 1, complete genomeputative serine O-acetyltransferase4e-0651.2