Pre_GI: BLASTP Hits

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Query: NC_003366:2356148:2376317 Clostridium perfringens str. 13, complete genome

Start: 2376317, End: 2377486, Length: 1170

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:2242432:2262676226267622638451170Clostridium perfringens SM101, complete genomealcohol dehydrogenase, short-chain family0747
NC_016641:5877164:5883085588308558842721188Paenibacillus terrae HPL-003 chromosome, complete genometrans-2-enoyl-CoA reductase6e-116417
NC_002971:211331:2411592411592423791221Coxiella burnetii RSA 493, complete genomehypothetical protein7e-113407
NC_020209:945000:9667839667839679761194Pseudomonas poae RE*1-1-14, complete genometrans-2-enoyl-CoA reductase8e-109394
NC_015567:2039443:2057446205744620586451200Serratia sp. AS9 chromosome, complete genomereductase1e-106386
NC_015566:2039431:2057434205743420586331200Serratia sp. AS12 chromosome, complete genomereductase1e-106386
NC_020211:2123819:2140338214033821415371200Serratia marcescens WW4, complete genometrans-2-enoyl-CoA reductase5e-106384
NC_010694:1966676:1980846198084619820451200Erwinia tasmaniensis, complete genomePutative short-chain alcohol dehydrogenase9e-106384
NC_014931:5088125:5121525512152551227211197Variovorax paradoxus EPS chromosome, complete genomeTrans-2-enoyl-CoA reductase (NAD(+))1e-105383
NC_010552:2541100:2561409256140925626111203Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceTrans-2-enoyl-CoA reductase (NAD(+))9e-105380
NC_008391:1768456:1790042179004217912441203Burkholderia cepacia AMMD chromosome 2, complete sequenceshort-chain alcohol dehydrogenase2e-104379
NC_018604:2377549:2397403239740323985781176Brachyspira pilosicoli WesB complete genometrans-2-enoyl-CoA reductase1e-102373
NC_019908:2285819:2286759228675922879341176Brachyspira pilosicoli P43/6/78 chromosome, complete genometrans-2-enoyl-CoA reductase2e-102373
NC_016147:151224:1692351692351704401206Pseudoxanthomonas spadix BD-a59 chromosome, complete genometrans-2-enoyl-CoA reductase6e-99361
NC_013517:2909798:2926129292612929273221194Sebaldella termitidis ATCC 33386, complete genomeTrans-2-enoyl-CoA reductase (NAD(+))1e-97357
NC_009348:47974:4797447974492811308Aeromonas salmonicida subsp. salmonicida A449, complete genometrans-2-enoyl-CoA reductase3e-92338
NC_015953:5865733:5883148588314858843681221Streptomyces sp. SirexAA-E chromosome, complete genometrans-2-enoyl-CoA reductase (NAD(+))3e-78292
NC_018750:6237875:6246562624656262477761215Streptomyces venezuelae ATCC 10712, complete genomeShort-chain alcohol dehydrogenase family2e-65249
NC_018750:6717315:672610267261026727094993Streptomyces venezuelae ATCC 10712, complete genomedehydrogenase2e-54213