Pre_GI: BLASTP Hits

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Query: NC_003366:2356148:2359768 Clostridium perfringens str. 13, complete genome

Start: 2359768, End: 2360193, Length: 426

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:2242432:224605222460522246477426Clostridium perfringens SM101, complete genomeflavodoxin8e-77285
NC_015873:380485:381055381055381468414Megasphaera elsdenii DSM 20460, complete genomeflavodoxin1e-1994.7
NC_013410:2037840:206446220644622064890429Fibrobacter succinogenes subsp. succinogenes S85 chromosome,flavodoxin8e-1889
NC_014624:2549219:255889325588932559321429Eubacterium limosum KIST612 chromosome, complete genomeflavodoxin6e-1786.3
NC_013665:1392111:141353014135301413976447Methanocella paludicola SANAE, complete genomeputative flavodoxin3e-1477.4
NC_014150:446359:450410450410450841432Brachyspira murdochii DSM 12563 chromosome, complete genomeflavodoxin/nitric oxide synthase3e-1373.6
NC_015152:1602412:162187316218731622298426Spirochaeta sp. Buddy chromosome, complete genomeflavodoxin5e-1269.7
NC_013192:305478:330139330139330561423Leptotrichia buccalis DSM 1135, complete genomeflavodoxin/nitric oxide synthase2e-0858.2
NC_013156:980888:9877199877199888851167Methanocaldococcus fervens AG86, complete genomebeta-lactamase domain protein1e-0755.5
NC_018867:2354000:2371056237105623722281173Dehalobacter sp. CF chromosome, complete genomerubredoxin-oxygen oxidoreductase2e-0754.7
NC_000909:467607:4691164691164702911176Methanocaldococcus jannaschii DSM 2661, complete genomeflavoprotein (fprA)4e-0753.5
NC_014222:1:2142821428226451218Methanococcus voltae A3 chromosome, complete genomebeta-lactamase domain protein9e-0752.4
NC_013887:1402980:1411037141103714122091173Methanocaldococcus sp. FS406-22 chromosome, complete genomeflavodoxin/nitric oxide synthase1e-0651.6
NC_000909:657904:6642576642576654381182Methanocaldococcus jannaschii DSM 2661, complete genomeflavoprotein (fprA)5e-0650.1
NC_015562:436128:4437034437034448691167Methanotorris igneus Kol 5 chromosome, complete genomebeta-lactamase domain-containing protein6e-0649.7