Pre_GI: BLASTP Hits

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Query: NC_003308:1:27251 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 27251, End: 28225, Length: 975

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003065:27163:606546065461628975Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencearginase9e-179625
NC_014034:2253649:227286122728612273790930Rhodobacter capsulatus SB1003 chromosome, complete genomearginase3e-98358
NC_015186:2165628:216618921661892167148960Acidiphilium multivorum AIU301, complete genomearginase4e-94344
NC_015675:6342164:636158163615816362501921Mesorhizobium opportunistum WSM2075 chromosome, complete genomearginase7e-91333
NC_019973:5716453:573587057358705736790921Mesorhizobium australicum WSM2073, complete genomearginase7e-91333
NC_014923:5787493:580691058069105807830921Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completearginase7e-91333
NC_010172:573046:594996594996595922927Methylobacterium extorquens PA1, complete genomearginase3e-75281
NC_010943:325739:341542341542342462921Stenotrophomonas maltophilia K279a, complete genomeputative arginase1e-57223
NC_015947:280095:297551297551298471921Burkholderia sp. JV3 chromosome, complete genomearginase2e-57223
NC_016043:1603499:161362016136201614531912Taylorella asinigenitalis MCE3 chromosome, complete genomearginase5e-53208
NC_020272:84227:857018570186591891Bacillus amyloliquefaciens IT-45, complete genomearginase2e-52206
NC_020244:3961337:398607039860703986960891Bacillus subtilis XF-1, complete genomearginase1e-52206
NC_014976:2117567:213937221393722140262891Bacillus subtilis BSn5 chromosome, complete genomearginase1e-52206
NC_017195:3919000:394635839463583947248891Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completearginase1e-52206
NC_016047:4108910:413750341375034138393891Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completearginase5e-52205
UCMB5137:3601629:362384236238423624732891Bacillus atrophaeus UCMB-5137arginase6e-52204
NC_017191:3841170:386130338613033862193891Bacillus amyloliquefaciens XH7 chromosome, complete genomearginase7e-52204
NC_017188:3839478:385961138596113860501891Bacillus amyloliquefaciens TA208 chromosome, complete genomearginase7e-52204
NC_014479:3939183:396426339642633965153891Bacillus subtilis subsp. spizizenii str. W23 chromosome, completearginase2e-51203
NC_009725:3809403:383147838314783832368891Bacillus amyloliquefaciens FZB42, complete genomeRocF2e-51203
NC_019842:3852062:387450938745093875399891Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,arginase2e-51203
NC_020410:3801583:382307538230753823965891Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completearginase2e-51203
NC_014958:629459:652456652456653340885Deinococcus maricopensis DSM 21211 chromosome, complete genomearginase1e-48194
NC_012029:904780:934055934055934960906Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genomearginase3e-44179
NC_017208:108134:161835161835162728894Bacillus thuringiensis serovar chinensis CT-43 chromosome, completearginase5e-44178
NC_014171:109280:160072160072160965894Bacillus thuringiensis BMB171 chromosome, complete genomearginase5e-44178
NC_015589:3852217:387109338710933871992900Desulfotomaculum ruminis DSM 2154 chromosome, complete genomearginase1e-43176
NC_010718:237962:245424245424246317894Natranaerobius thermophilus JW/NM-WN-LF, complete genomearginase2e-43176
NC_011567:139598:150895150895151791897Anoxybacillus flavithermus WK1, complete genomeArginase6e-43174
NC_017341:2303005:231961023196102320518909Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,arginase2e-42172
NC_002951:2208813:222541622254162226324909Staphylococcus aureus subsp. aureus COL, complete genomearginase2e-42172
NC_006396:320853:338707338707339654948Haloarcula marismortui ATCC 43049 chromosome I, complete sequencearginase7e-41167
NC_015732:982774:985027985027985935909Spirochaeta caldaria DSM 7334 chromosome, complete genomearginase1e-39164
NC_013922:799186:8189118189118199661056Natrialba magadii ATCC 43099 chromosome, complete genomearginase3e-34145
NC_010556:141374:153056153056153964909Exiguobacterium sibiricum 255-15, complete genomearginase7e-27121
NC_018665:139646:153006153006153914909Exiguobacterium antarcticum B7 chromosome, complete genomeArginase2e-26119
NC_014307:3240430:325233132523313253260930Ralstonia solanacearum CFBP2957 chromosome, complete genomearginase4e-24112
NC_012673:1540000:154791515479151548817903Exiguobacterium sp. AT1b, complete genomearginase5e-2098.6
NC_010336:1335558:133918013391801340049870Francisella philomiragia subsp. philomiragia ATCC 25017, completehypothetical protein7e-1994.7
NC_016628:1:9343934310266924Vibrio furnissii NCTC 11218 chromosome 2, complete sequencearginase/agmatinase/formimionoglutamate hydrolase2e-1790.1
NC_013744:300000:3076783076783086851008Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completeArginase/agmatinase/formiminoglutamase2e-1273.2
NC_017191:3766960:378848837884883789438951Bacillus amyloliquefaciens XH7 chromosome, complete genomeformimidoylglutamase3e-1066.2
NC_017190:3812065:383361738336173834567951Bacillus amyloliquefaciens LL3 chromosome, complete genomeformiminoglutamate hydrolase3e-1066.2
NC_017188:3764061:378679637867963787746951Bacillus amyloliquefaciens TA208 chromosome, complete genomeformimidoylglutamase3e-1066.2
NC_014551:3797047:381859538185953819545951Bacillus amyloliquefaciens DSM 7, complete genomeformiminoglutamate hydrolase3e-1066.2
NC_020244:3681236:369081036908103691682873Bacillus subtilis XF-1, complete genomeagmatinase2e-0963.9
NC_009376:1633283:163597016359701636776807Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeagmatinase3e-0962.8
NC_010718:2977021:2980253298025329812541002Natranaerobius thermophilus JW/NM-WN-LF, complete genomeagmatinase3e-0962.8
NC_015588:2468207:2473514247351424747191206Isoptericola variabilis 225 chromosome, complete genomeagmatinase9e-0961.2
NC_019842:3594409:360558936055893606461873Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,agmatinase1e-0861.2
NC_014640:5897421:591108259110825911981900Achromobacter xylosoxidans A8 chromosome, complete genomearginase family protein 21e-0861.2
NC_020410:3547345:356447335644733565345873Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeagmatinase1e-0860.8
NC_009725:3559257:357043635704363571308873Bacillus amyloliquefaciens FZB42, complete genomeSpeB1e-0860.8
NC_013222:1898164:190357519035751904357783Robiginitalea biformata HTCC2501, complete genomearginase2e-0860.1
NC_014666:7222000:7223404722340472245041101Frankia sp. EuI1c chromosome, complete genomeagmatinase4e-0859.3
NC_012581:803456:827115827115828086972Bacillus anthracis str. CDC 684 chromosome, complete genomeformimidoylglutamase7e-0858.5
NC_016779:3418538:342260634226063423577972Bacillus cereus F837/76 chromosome, complete genomeFormiminoglutamase7e-0858.2
NC_009253:529494:530341530341531207867Desulfotomaculum reducens MI-1 chromosome, complete genomeputative agmatinase7e-0858.2
NC_010184:5120359:513921351392135140085873Bacillus weihenstephanensis KBAB4, complete genomeputative agmatinase1e-0757.8
NC_014915:1909275:195329219532921954266975Geobacillus sp. Y412MC52 chromosome, complete genomeagmatinase1e-0757.4
NC_015588:2468207:2474766247476624759921227Isoptericola variabilis 225 chromosome, complete genomeagmatinase2e-0757.4
NC_009338:817854:8178548178548188671014Mycobacterium gilvum PYR-GCK chromosome, complete genomeputative agmatinase6e-0755.1
NC_014964:1169925:118626111862611187127867Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeagmatinase9e-0754.7
NC_014538:1311500:131297713129771313843867Thermoanaerobacter sp. X513 chromosome, complete genomeagmatinase9e-0754.7
NC_010320:1585974:160053916005391601405867Thermoanaerobacter sp. X514 chromosome, complete genomeputative agmatinase9e-0754.7
NC_010321:1177238:119407011940701194936867Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeputative agmatinase9e-0754.7
NC_007494:867901:868720868720869682963Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceputative agmatinase2e-0653.5
NC_009712:2092440:211066021106602111634975Candidatus Methanoregula boonei 6A8, complete genomeputative agmatinase3e-0653.1
NC_014532:1713987:171742017174201718361942Halomonas elongata DSM 2581, complete genomeformimidoylglutamase3e-0653.1
NC_020210:1275031:131217413121741313139966Geobacillus sp. GHH01, complete genomeguanidinobutyrase6e-0652
NC_007348:2519447:253275325327532533727975Ralstonia eutropha JMP134 chromosome 2, complete sequencePutative agmatinase7e-0651.6
NC_010676:2621496:262378126237812624755975Burkholderia phytofirmans PsJN chromosome 2, complete sequenceagmatinase1e-0551.2