Pre_GI: BLASTP Hits

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Query: NC_003308:1:23231 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 23231, End: 24472, Length: 1242

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003065:27163:5663456634578751242Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencenopaline synthase0832
NC_011982:130199:1382201382201393561137Agrobacterium vitis S4 plasmid pTiS4, complete sequenceD-nopaline dehydrogenase2e-99362
NC_007762:88979:9821698216992711056Rhizobium etli CFN 42 plasmid p42a, complete sequenceD-lysopine dehydrogenase/D-octopine dehydrogenase protein5e-1272.4
NC_014011:1264165:1272539127253912736181080Aminobacterium colombiense DSM 12261 chromosome, complete genomeNAD/NADP octopine/nopaline dehydrogenase3e-1170.1