Pre_GI: BLASTP Hits

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Query: NC_003308:1:10288 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 10288, End: 10482, Length: 195

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003065:27163:436914369143885195Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence7e-31132
NC_003065:27163:527405274053462723Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceisopentenyl transferase2e-1788.2
NC_003308:1:193371933720059723Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceisopentenyl transferase2e-1788.2
NC_013722:3022236:304352030435203044236717Xanthomonas albilineans, complete genomeprobable isopentenyl transferase protein1e-1581.6
NC_011982:206784:221625221625222335711Agrobacterium vitis S4 plasmid pTiS4, complete sequenceisopentenyl transferase7e-1475.9