Pre_GI: BLASTP Hits

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Query: NC_003305:693810:705643 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 705643, End: 706137, Length: 495

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003063:1358738:136861913686191369191573Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein3e-93339
NC_009952:749426:753664753664754239576Dinoroseobacter shibae DFL 12, complete genomeredoxin domain protein9e-44175
NC_015434:5411:199961999620904909Verrucosispora maris AB-18-032 chromosome, complete genomethiol-specific antioxidant-like protein/peroxidoxin BcpB7e-32136
NC_002578:377783:377783377783378244462Thermoplasma acidophilum DSM 1728, complete genomethiol-specific antioxidant related protein9e-1166.2
NC_014733:1073540:107856210785621079128567Methylovorus sp. MP688 chromosome, complete genomealkyl hydroperoxide reductase/ thiol specific antioxidant/ mal allergen1e-0962.4
NC_007181:2054663:207013720701372070604468Sulfolobus acidocaldarius DSM 639, complete genomeuniversally conserved protein2e-0961.6
NC_008820:1659612:166232616623261662787462Prochlorococcus marinus str. MIT 9303, complete genomeputative bacterioferritin comigratory protein4e-0960.8
NC_004113:1234048:123984612398461240283438Thermosynechococcus elongatus BP-1, complete genomebacterioferritin comigratory protein6e-0960.1
NC_013595:1851226:186611518661151866579465Streptosporangium roseum DSM 43021, complete genomethioredoxin-dependent thiol peroxidase7e-0960.1
NC_007947:1229807:123509912350991235644546Methylobacillus flagellatus KT, complete genomealkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen1e-0858.9
NC_009925:5479613:549503054950305495467438Acaryochloris marina MBIC11017, complete genomebacterioferritin comigratory protein2e-0858.5
NC_014831:388007:395127395127395588462Thermaerobacter marianensis DSM 12885 chromosome, complete genomePeroxiredoxin3e-0857.8
NC_012968:1352463:135362313536231354162540Methylotenera mobilis JLW8, complete genomealkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen6e-0856.6
NC_009925:1109770:112848511284851128955471Acaryochloris marina MBIC11017, complete genomebacterioferritin comigratory protein9e-0856.2
NC_011567:388358:397547397547398008462Anoxybacillus flavithermus WK1, complete genomePeroxiredoxin9e-0856.2
NC_007604:1875268:187526818752681875741474Synechococcus elongatus PCC 7942, complete genomebacterioferritin comigratory protein1e-0755.5
NC_006576:2423250:244131024413102441783474Synechococcus elongatus PCC 6301, complete genomebacterioferritin comigratory protein1e-0755.5
NC_019974:2421422:242500224250022425457456Natronococcus occultus SP4, complete genomePeroxiredoxin4e-0650.8