Pre_GI: BLASTP Hits

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Query: NC_003305:1:11241 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 11241, End: 11624, Length: 384

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003063:2059311:206313220631322063617486Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein1e-70264
NC_015381:1892546:191291819129181913304387Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein2e-35147
NC_017249:7341428:735823573582357358642408Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein5e-35145
NC_012791:2386000:239976923997692400173405Variovorax paradoxus S110 chromosome 1, complete genomeprotein of unknown function DUF14861e-32137
NC_016582:11672500:116896521168965211690044393Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein2e-1064.3
NC_012792:310443:331604331604332047444Variovorax paradoxus S110 chromosome 2, complete genomeprotein of unknown function DUF14861e-0755.1