Pre_GI: BLASTP Hits

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Query: NC_003304:2507000:2509329 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Start: 2509329, End: 2509949, Length: 621

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003062:2506959:250921625092162509995780Agrobacterium tumefaciens str. C58 chromosome circular, completehypothetical protein1e-118425
NC_002947:5386489:541099754109975411644648Pseudomonas putida KT2440, complete genometranscriptional regulator, TetR family1e-68259
NC_004129:4093610:409872240987224099363642Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, TetR family2e-68258
NC_016625:171341:176556176556177182627Burkholderia sp. YI23 chromosome 2, complete sequenceTetR family transcriptional regulator6e-65246
NC_016625:171341:179483179483180133651Burkholderia sp. YI23 chromosome 2, complete sequenceTetR family transcriptional regulator4e-61234
NC_007802:1484641:149616814961681496782615Jannaschia sp. CCS1, complete genomeputative transcriptional regulator, TetR family5e-39160
NC_020911:1859210:187578418757841876398615Octadecabacter antarcticus 307, complete genomeputative HTH-type transcriptional regulatory protein4e-37154
NC_007802:1240989:125796812579681258576609Jannaschia sp. CCS1, complete genometranscriptional regulator, TetR family1e-1892.8
NC_012491:4231469:425141842514184251933516Brevibacillus brevis NBRC 100599, complete genomeprobable transcriptional regulator7e-1580.5
NC_010581:3387118:338925733892573389799543Beijerinckia indica subsp. indica ATCC 9039, complete genometranscriptional regulator, TetR family2e-1375.9
NC_013757:1438812:147299414729941473593600Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, TetR family7e-1270.5
NC_016947:2210339:223468822346882235284597Mycobacterium intracellulare MOTT-02 chromosome, complete genomehypothetical protein3e-1168.6
NC_016111:1546505:154996115499611550524564Streptomyces cattleya NRRL 8057, complete genomeTranscriptional regulator, TetR family6e-1167.4
NC_017082:6687020:668908066890806689628549Bradyrhizobium sp. S23321, complete genometranscriptional regulator9e-1063.5