Pre_GI: BLASTP Hits

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Query: NC_003198:4513900:4524140 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 4524140, End: 4524679, Length: 540

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004631:4494000:450694945069494507488540Salmonella enterica subsp. enterica serovar Typhi Ty2, completeVi polysaccharide biosynthesis protein3e-102370
NC_012125:4559990:457277045727704573201432Salmonella enterica subsp. enterica serovar Paratyphi C strainVi polysaccharide biosynthesis protein1e-78291
NC_016832:4482437:449521744952174495375159Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Vi polysaccharide biosynthesis protein tviA1e-23108
NC_016612:2902628:291720829172082917825618Klebsiella oxytoca KCTC 1686 chromosome, complete genomeresponse regulator receiver protein2e-0651.6
NC_016845:1407339:142032914203291420946618Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,RmbA3e-0651.6