Pre_GI: BLASTP Hits

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Query: NC_003198:3586000:3598381 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 3598381, End: 3598457, Length: 77

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002695:4153394:41620894162089416216577Escherichia coli O157:H7 str. Sakai, complete genometRNA-Ile7e-0649.3
NC_003198:2703013:27158532715853271592977Salmonella enterica subsp. enterica serovar Typhi str. CT18,tRNA-Ile7e-0649.3
CP002185:3627992:36400463640046364012277Escherichia coli W, complete genometRNA-Ile7e-0649.3
CP002516:3863932:38859743885974388605077Escherichia coli KO11, complete genometRNA-Ile7e-0649.3