Pre_GI: BLASTP Hits

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Query: NC_003198:1908238:1924564 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 1924564, End: 1924806, Length: 243

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016612:3803130:381468138146813814902222Klebsiella oxytoca KCTC 1686 chromosome, complete genomehelix-turn-helix domain-containing protein3e-1580.5
NC_012660:3116500:312846731284673128694228Pseudomonas fluorescens SBW25 chromosome, complete genomeputative cro repressor1e-1272
NC_017328:303987:318413318413318628216Shigella flexneri 2002017 chromosome, complete genomecro protein8e-1165.9
NC_013364:2645438:265199426519942652209216Escherichia coli O111:H- str. 11128, complete genomeputative antirepressor protein Cro8e-1165.9
NC_011601:1039500:105254110525411052756216Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeantirepressor protein8e-1165.9
NC_004431:1401681:141304014130401413420381Escherichia coli CFT073, complete genomehypothetical protein1e-1065.5
NC_008563:1175035:118837111883711188655285Escherichia coli APEC O1, complete genomehypothetical protein1e-1065.5
NC_013941:975353:989930989930990214285Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-1065.5
NC_011742:1177946:119185811918581192244387Escherichia coli S88 chromosome, complete genomerepressor protein1e-1065.1
NC_007712:1926500:194404719440471944358312Sodalis glossinidius str. 'morsitans', complete genomeputative phage repressor1e-1065.1
NC_014306:3524980:356761535676153567845231Erwinia billingiae Eb661, complete genomePhage Cro protein7e-1062.8
NC_013850:1887556:190073119007311900940210Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, XRE family5e-0959.7
NC_009783:1956000:195751919575191957785267Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein3e-0650.8